SILENT_MODE
BLOCK_FILE jp_ps3Ch4g.concise.blc
MAX_NSEQ 113
MAX_INPUT_LEN 115
OUTPUT_FILE jp_ps3Ch4g.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 141 102   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 103 141 112 H SPACE
SUB_CHARS 1 103 141 112 E SPACE
SUB_CHARS 1 103 141 112 - SPACE
STRAND 50 106 53
COLOUR_TEXT_REGION 50 106 53 106 51
STRAND 99 106 101
COLOUR_TEXT_REGION 99 106 101 106 51
STRAND 128 106 131
COLOUR_TEXT_REGION 128 106 131 106 51
HELIX 12 106 23
COLOUR_TEXT_REGION 12 106 23 106 50
HELIX 30 106 40
COLOUR_TEXT_REGION 30 106 40 106 50
HELIX 60 106 89
COLOUR_TEXT_REGION 60 106 89 106 50
HELIX 103 106 124
COLOUR_TEXT_REGION 103 106 124 106 50
STRAND 50 111 53
COLOUR_TEXT_REGION 50 111 53 111 51
STRAND 99 111 101
COLOUR_TEXT_REGION 99 111 101 111 51
STRAND 128 111 131
COLOUR_TEXT_REGION 128 111 131 111 51
HELIX 12 111 25
COLOUR_TEXT_REGION 12 111 25 111 50
HELIX 30 111 31
COLOUR_TEXT_REGION 30 111 31 111 50
HELIX 34 111 38
COLOUR_TEXT_REGION 34 111 38 111 50
HELIX 60 111 89
COLOUR_TEXT_REGION 60 111 89 111 50
HELIX 103 111 125
COLOUR_TEXT_REGION 103 111 125 111 50
STRAND 51 112 52
COLOUR_TEXT_REGION 51 112 52 112 51
STRAND 98 112 101
COLOUR_TEXT_REGION 98 112 101 112 51
STRAND 128 112 131
COLOUR_TEXT_REGION 128 112 131 112 51
HELIX 12 112 17
COLOUR_TEXT_REGION 12 112 17 112 50
HELIX 29 112 40
COLOUR_TEXT_REGION 29 112 40 112 50
HELIX 62 112 77
COLOUR_TEXT_REGION 62 112 77 112 50
HELIX 79 112 88
COLOUR_TEXT_REGION 79 112 88 112 50
HELIX 103 112 124
COLOUR_TEXT_REGION 103 112 124 112 50