QUERY           : MKHFLTYLSTAPVLAAIWMTITAGILIEFNRFYPDLLFHPL : QUERY 
UniRef90_E3T2J2 : MQDVKTYLSTAPVVATLWFGSSAGLSTEINRSSPDALVLPL : UniRef90_E3T2J2
UniRef90_K4AKL7 : MRDIKKYLSVAPVPSALWFGALARLLIEINRLFPDVLSF-- : UniRef90_K4AKL7
UniRef90_Q85X34 : MQDLKTYLSTAPVLAILCCSFLAGLVIEINRFFPDALTLTF : UniRef90_Q85X34
UniRef90_Q2WGG4 : -QDVKTYPPAAPVLAMSRFGSLAGSSIEINRFFPDAPVSP- : UniRef90_Q2WGG4
UniRef90_A7M917 : MRDFKTYLSVAPVLSTLSLGFLTGFLIEMNRFFPDALTFPF : UniRef90_A7M917
UniRef90_P23075 : MKHFLTYLSTAPVLALXXXXXXAGLLIEINRFFPDALTFPF : UniRef90_P23075
UniRef90_J3LU86 : MHGIKTFFSIAPVLNTLWFRTITSLLIGINRLFSDALSF-- : UniRef90_J3LU86
UniRef90_C7SM11 : MRDIKTYLSVAPVLSTLWFGAXAGL---------------- : UniRef90_C7SM11

                : 1---------11--------21--------31-------- :
OrigSeq         : MKHFLTYLSTAPVLAAIWMTITAGILIEFNRFYPDLLFHPL : OrigSeq

Jnet            : -----------HHHHHHHHHHHHHHHHHHH----------- : Jnet
jhmm            : ---HHHH--HHHHHHHHHHHHHHHHHHHHHHH--------- : jhmm
jpssm           : ------------HHHHHHHHHHHHHHHHH------------ : jpssm

Lupas 14        : ----------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------- : Lupas 28

Jnet_25         : ---B--BBBBBBBBBBB-BBBBBBBBBBBBBBBB----B-- : Jnet_25
Jnet_5          : ----------B-B-B-B---------B-------------- : Jnet_5
Jnet_0          : ----------------------------------------- : Jnet_0
Jnet Rel        : 99841126733278999999999999874223777778889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.