SILENT_MODE
BLOCK_FILE jp_UO9SJhg.concise.blc
MAX_NSEQ 86
MAX_INPUT_LEN 88
OUTPUT_FILE jp_UO9SJhg.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 151 75   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 76 151 85 H SPACE
SUB_CHARS 1 76 151 85 E SPACE
SUB_CHARS 1 76 151 85 - SPACE
HELIX 21 79 29
COLOUR_TEXT_REGION 21 79 29 79 50
HELIX 40 79 62
COLOUR_TEXT_REGION 40 79 62 79 50
HELIX 71 79 92
COLOUR_TEXT_REGION 71 79 92 79 50
HELIX 121 79 124
COLOUR_TEXT_REGION 121 79 124 79 50
HELIX 127 79 148
COLOUR_TEXT_REGION 127 79 148 79 50
STRAND 121 84 122
COLOUR_TEXT_REGION 121 84 122 84 51
HELIX 21 84 29
COLOUR_TEXT_REGION 21 84 29 84 50
HELIX 40 84 62
COLOUR_TEXT_REGION 40 84 62 84 50
HELIX 71 84 93
COLOUR_TEXT_REGION 71 84 93 84 50
HELIX 123 84 124
COLOUR_TEXT_REGION 123 84 124 84 50
HELIX 127 84 149
COLOUR_TEXT_REGION 127 84 149 84 50
HELIX 21 85 29
COLOUR_TEXT_REGION 21 85 29 85 50
HELIX 40 85 56
COLOUR_TEXT_REGION 40 85 56 85 50
HELIX 58 85 62
COLOUR_TEXT_REGION 58 85 62 85 50
HELIX 80 85 90
COLOUR_TEXT_REGION 80 85 90 85 50
HELIX 116 85 136
COLOUR_TEXT_REGION 116 85 136 85 50
HELIX 141 85 148
COLOUR_TEXT_REGION 141 85 148 85 50