SILENT_MODE
BLOCK_FILE jp_uddkoox.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_uddkoox.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 127 39   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 40 127 49 H SPACE
SUB_CHARS 1 40 127 49 E SPACE
SUB_CHARS 1 40 127 49 - SPACE
STRAND 11 43 21
COLOUR_TEXT_REGION 11 43 21 43 51
STRAND 30 43 40
COLOUR_TEXT_REGION 30 43 40 43 51
STRAND 57 43 61
COLOUR_TEXT_REGION 57 43 61 43 51
STRAND 72 43 75
COLOUR_TEXT_REGION 72 43 75 43 51
STRAND 78 43 83
COLOUR_TEXT_REGION 78 43 83 43 51
STRAND 97 43 100
COLOUR_TEXT_REGION 97 43 100 43 51
STRAND 105 43 107
COLOUR_TEXT_REGION 105 43 107 43 51
HELIX 2 43 8
COLOUR_TEXT_REGION 2 43 8 43 50
HELIX 108 43 119
COLOUR_TEXT_REGION 108 43 119 43 50
STRAND 11 48 21
COLOUR_TEXT_REGION 11 48 21 48 51
STRAND 30 48 40
COLOUR_TEXT_REGION 30 48 40 48 51
STRAND 57 48 61
COLOUR_TEXT_REGION 57 48 61 48 51
STRAND 73 48 75
COLOUR_TEXT_REGION 73 48 75 48 51
STRAND 78 48 83
COLOUR_TEXT_REGION 78 48 83 48 51
STRAND 97 48 100
COLOUR_TEXT_REGION 97 48 100 48 51
STRAND 105 48 107
COLOUR_TEXT_REGION 105 48 107 48 51
HELIX 2 48 8
COLOUR_TEXT_REGION 2 48 8 48 50
HELIX 108 48 119
COLOUR_TEXT_REGION 108 48 119 48 50
STRAND 12 49 19
COLOUR_TEXT_REGION 12 49 19 49 51
STRAND 30 49 40
COLOUR_TEXT_REGION 30 49 40 49 51
STRAND 57 49 62
COLOUR_TEXT_REGION 57 49 62 49 51
STRAND 72 49 75
COLOUR_TEXT_REGION 72 49 75 49 51
STRAND 78 49 83
COLOUR_TEXT_REGION 78 49 83 49 51
STRAND 97 49 100
COLOUR_TEXT_REGION 97 49 100 49 51
HELIX 2 49 8
COLOUR_TEXT_REGION 2 49 8 49 50
HELIX 20 49 20
COLOUR_TEXT_REGION 20 49 20 49 50
HELIX 106 49 107
COLOUR_TEXT_REGION 106 49 107 49 50
HELIX 109 49 119
COLOUR_TEXT_REGION 109 49 119 49 50