QUERY                  : ELQRREEEANVVLTGTVEEIMNVDPVHHTYSCKVRVWRYLKGKDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAHRNELMLNSSLMRITLRNLEEVEHCVEEHRKLLA : QUERY 
UniRef90_UPI0004447388 : NLEDREEEANVVLTGTVDEIFNMDPVHKTYYCKVRVWRYLKGKSSINRVILLDGGNKVTIGGFGNPRICDNQVATGDTRIFFLNLAPESVGLDHKNELMLNSSLMRITLRNLEEVEHCVEDKPS--- : UniRef90_UPI0004447388
UniRef90_UPI0002A4928A : --------ANVVLTGTVDEIINVDPVHHTYSCKVRVWRYLKGKSNVNRQILLDGGNKVMIGGFGNPRICDNQVSTGDTRIFFLNPAPESAAPEHKNELMLNSSLMRITLRNLEDVEHCVEDKPS--- : UniRef90_UPI0002A4928A
UniRef90_V9KA50        : -LQSREQAANVVLTGTVEEIVNLDPVLDTYSCKVRVWRYLKGKETLKNELLLD-GNKVMICGFGDPSICDNQVSTGDTRIFFVNPAPEFMWPAHKNELMLNSSLMRITLRNLEEVENCVEDKP---- : UniRef90_V9KA50
UniRef90_W5KZX3        : --------ANIVLTGTVEEIMNMDPVHNTYSCKVRVWRYLKGKTMVNGEVLLDGGNKVMIGGFGDPGICDNQVATGDTRIFFVNLAPEYMWPAHKNELMLNSSLMRITLRNLEEVELCVEGKTPLLS : UniRef90_W5KZX3
UniRef90_V8NE38        : --------ANVVLTGTVEEIFNVDPVHQTYSCKVRVWRYLKGKEVVTHEILLDGGNKVMIGGFGDPLICDNQVSTGDTRIFFVNPAPHYMWPAHKNELMLNSSLMRI-------------------- : UniRef90_V8NE38
UniRef90_U3J805        : --------------------------------QVRVWRYLKGKDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAHRNELMLNSSLMRITLRNLEDVEHCVEDISGVLC : UniRef90_U3J805
UniRef90_UPI00046B5B5C : ----------------VERTNDTCPV----SPQVRVWRYLKGKELVAQESLVDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPPYLWPAHKNELMLNSSLMRITLRNLEEVEFCVEGQLP--- : UniRef90_UPI00046B5B5C
UniRef90_F7G642        : ---------NVVLTGTVEEILNVDPVQHTYSCKVRVWRYLKGKELVARESLLDGGNKVVISGFGDPLICDNQVQVGDVSVYAGWPGIPIVWPCVWTRGLMPASFPNMSLRGL--------------- : UniRef90_F7G642
UniRef90_UPI0003F0DB47 : -IELREEMANVVLTGTINNIYR-KPYTKMYSCEVRVVRVFKGDNMLNGNMKKHSPATIMVDGFGAPQICENSVRKGDTRILLL-------ERDQVGNLKLNSSVVRITMNNLDRAEAAVSDIP---- : UniRef90_UPI0003F0DB47
UniRef90_UPI00034F5CD1 : ---------------------------------------------------MDGGNKVVISGFGDPLICDNQVSTGDTRIFFVNPAPRYLWPAHKNELMLNSSLMRITLRNLEEVEFCVEDKLGT-- : UniRef90_UPI00034F5CD1
UniRef90_UPI0001D54D35 : ---------NVVLTGTVEEILNVDPVQHTYSCKVRVWRYLKGKELVARESLLDGGNKVVISGFGDPLICDNQVSTGDTRIXXXPPEAQLGWGC---------------------------------- : UniRef90_UPI0001D54D35
UniRef90_R7V3C8        : -LEMAEEEANVVFTGTVRGLYKDWEHPDMMKAQVEIKRIFKGNNVVNGLPSGQSGSSIMVDGIGDPHICQSKARKYDTRIFLANKGAN-------GELKLNSSLVRLTLSNLEHTEAVVKSEYNT-- : UniRef90_R7V3C8
UniRef90_W4XF61        : -VEKREEIANVVISGYIHRIMR-KPRTIMYDCDIEVVRVFKGSEALYSNVVPPDGNTIQIGGFGDPAICDNAVTPGETRIFMMNKNGN-------GHLMLNSSVIRITLNNLVQAEAAV-------- : UniRef90_W4XF61
UniRef90_K1QM75        : -MEIREEMADVVVTGTVKSVSALQRGSKLYSAVVEIKRVMKGEDLLGESSVSNAGQEVLVQGFGDPRFCENTVRVFDTRILMLSLDDGGI-------LRLNSSVVRISLRNLDRVEHAVNGKK---- : UniRef90_K1QM75
UniRef90_V4BNM5        : -LETREEMANVVITGTVKEVMLDSKGGGMYKGEVEVKRILKDRNLVPKVANFEDPKMIMIEGFGDPHICDSEIRRHDTKIFLLNPNGN-------GELKLNSSIVPVTLINLDYTDAVVKGK----- : UniRef90_V4BNM5
UniRef90_C3XQ33        : NLMKRVRRATAIVTGTVEQKMNGYP-DGKYKAKVRVWRVMKGTNEIPTQPLRDPSREVMVDGFGDPHICDNEVDQGDTRIFLLDKKPAG----PPDEFELTSSLIRVTLDNLIHAESA--------- : UniRef90_C3XQ33
UniRef90_UPI000359A15C : -INDRTDMAMVVVSGTVKKLMS-DELHSTFRGEVEIKRIFKGGQVVDTLATITPGKMVMVEGFGDPEICDNVVKERDTKIFMLSPNGN-------GELKLNSSVVPLTLHNLDYVDSVVNREYPTLT : UniRef90_UPI000359A15C
UniRef90_T1ISD8        : -LEVREEYATVIFTGTVWRVFRTSEQKFTYSAEVKVRRVLKGGDHVNADTL------VVIDEIGTPLICRNRVREKDTRIFFLTQG--------VNHLRFNSSVIRMTMANLLRVMAAVK------- : UniRef90_T1ISD8
UniRef90_F1KQV3        : ------QNAQVVLTATVQQVTIDPRNNRLQTATVRVKRVIKGREFIGNA------HQIAIYGLGDTKYCRSMLYERDTKVILL--------REQNGLLYLNSSLISINLDVLDLIDAIIRG------ : UniRef90_F1KQV3
UniRef90_E5SMP2        : SLQALIKRADVILSATVLSVKKLKSYSDFFEARISIRRIWKGEHLIPSRRFGQ----LTVQGIANPSICHSRAVEKDTKIFLLKLLK-------DGRIQLDSSLLSINLANLDAVNAYVQACYSLL- : UniRef90_E5SMP2
UniRef90_W4ZIX7        : SVEKRTALADVIISGTVLRVLRHQRSDSTYPADVLVADVYKGYELFDNATSL-SEDEIQIDRFGDQRLCWADVVPGKNYVFYLNPSPRDLEMASDGEEVVDMSTM---------------------- : UniRef90_W4ZIX7
UniRef90_T1EVC4        : -IEEKVNNAEFIFSGTVREVYNVDKKAQ--KASVEIKRIFKGQHKLTQLFLSEIKGRFTVEGLGLDGLCSSHTRVFDTWLFFTNP--------VDDKLQLNSSLVRLSVMSIASIESAVAD------ : UniRef90_T1EVC4
UniRef90_A7RGH5        : ---QRAQLAKVVFIGKVADIYSLDNETQTYAADFEIHRVLKGRQIIDEVLAKHPGRTVKVYGFGEKRMCFSEVYKGETHMVFM-------------------------------------------- : UniRef90_A7RGH5
UniRef90_B3S003        : -LQQRISNADYVITAKVLNI-NRNQQQPTYSSNVEVIEVFKPPRL--SLPLS-----ITIDNFGNTRICRSNVNTNDTRILLFNGSSQ--------KYVLSTSFEYVTEERLKLIRTAVQDPTG--- : UniRef90_B3S003
UniRef90_A0A044QTT2    : ------QHASIVISATVLDVTVDPRDNQLQTATVRVKRIFKGFNIIN------GRTKIAIHGLGNIQFCPSILRERDTKIILLN--------ELNGLFYLNSSLVPVNLNVLDQLN----------- : UniRef90_A0A044QTT2
UniRef90_H2XU25        : ---EKNSTSTVILTGTVQ--YCDVIRAGSYKCNIKIWRVMKGNSLAMNLITIQKKKYVDVYGLGNSAFCKSNVERADTRIFFLNKL--------NNRLVVSASLDRITLKNLENTQKVIE------- : UniRef90_H2XU25
UniRef90_E9H691        : SLEERQNRSQVVFTAVIESVEDDQELCQRYAINVRIKKVVKGLDRMWE------GRRVRVEGLRDPRICPSRVRLRDTRIFLVNQDDETLAPVHPIRLRLNSSLMSVSLRHLQQLRAFTKD------ : UniRef90_E9H691
UniRef90_K1P6L3        : ---NRTLLADVVVSGFVHETYKDFRSQDTYSAKIELVTVYKGQELVDNLTSV-AKNTFVISNFGDKKMCYADIQENEMYILFLT------------------------------------------- : UniRef90_K1P6L3
UniRef90_C3Z062        : ---ERARRADVVLSGTVVRTDALPRQPGTYSARVRVRTVLKGKSRLREIPAISDQPRVYVSNFGRRAQCYSEVTQGDDVIFFL-------------------------------------------- : UniRef90_C3Z062
UniRef90_T1KCH0        : -----TDLSNVVLTGFIEQTYSLDNGEI-YSGSVLVKRVFRG-------PSKFQGNRVTIDGLGDASYCQSKGQRGESWIFQLSQIS-------DGYFRLNGTLLKLNLDNLDRINALVEDH----- : UniRef90_T1KCH0
UniRef90_UPI0002B4BB09 : ---ERTKDAEFVLTAKILYTTPSPRYPQFYSATFEVLNVLKGWELITSIISLDPKIIATANGFSDSQLCFSSVEVGKTYALFL-------------------------------------------- : UniRef90_UPI0002B4BB09
UniRef90_A0A016VMM9    : -LNDTFSTSQVLLSGTVERITVDENVAQTL--NIRVRRIFKGRELVGSPQYID----VAVPRF---KFCISALLLHDTRVFAISLRG--------TSLEISAPVIPVNLSVLDSLHSFTWGKP---- : UniRef90_A0A016VMM9
UniRef90_UPI00035A020F : -------RAQAVVMGTVMEWNPSARHERTRSANVSVEKVYKGEGIVNNARAGDD-RMIMVSQFGDKDSCDTEMTSEKKHIFFLRQSHH--------RGMLQMSALPLPMES---------------- : UniRef90_UPI00035A020F
UniRef90_D6W6H1        : -LQKQIDLANFVFTGKVSDIRFLDNRTIVFS--VYVRRYFK------NNAGLSDNQEVRVDGEGVK--CRQVLRYRYTAIFIGRK-PQKLDADV----QLTINPVPVTLTNLDRVTAATKDQ----- : UniRef90_D6W6H1
UniRef90_UPI000022266F : ------ENSDVILAGIISGIS--YRVDSLYIENITVRRIYKGREYLDE------GKIIVIGNVLETEPCAHRLLASDVRIFALT--------NQQGTFLLDAPMIRVSL------------------ : UniRef90_UPI000022266F

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121---- :
OrigSeq                : ELQRREEEANVVLTGTVEEIMNVDPVHHTYSCKVRVWRYLKGKDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAHRNELMLNSSLMRITLRNLEEVEHCVEEHRKLLA : OrigSeq

Jnet                   : -HHHHHHH--EEEEEEEEEEE--------EEEEEEEEEEE----------------EEEEE----------EEEE--EEEEEE-------------EEEE----EEEHHHHHHHHHHHH-------- : Jnet
jhmm                   : -HHHHHHH--EEEEEEEEEEE--------EEEEEEEEEEE----------------EEEEE-----------EEE--EEEEEE-------------EEEE----EEEHHHHHHHHHHHH-------- : jhmm
jpssm                  : -HHHHHHH---EEEEEEEEH---------EEEEEEEEEEE----------------EEEEEE---------EEEE--EEEEEE-------------EEEE-----HH-HHHHHHHHHHH-------- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : -B--B---B-BBBBBBB--B---------B-B-B-BB-BB----BB--BB-------B-B--BB---BB---B----BBBBBBB-----B---B--BB-B-BBBB-BBB-BB--B--BB------B- : Jnet_25
Jnet_5                 : --------B-BBB-B----B-----------B-B-B--B------B-----------B-B--------B----------BBBB------B-------B-B-B-BB-B-B--B--B--BB-------- : Jnet_5
Jnet_0                 : -----------BB-B--------------------------------------------B-------------------BB------------------B--------------B------------ : Jnet_0
Jnet Rel               : 6588886177268875321415777777435788889985367655555667777348886157777765215753458998536777666777634774467612012427999988505788899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.