SILENT_MODE BLOCK_FILE jp_Jlosg1v.concise.blc MAX_NSEQ 931 MAX_INPUT_LEN 933 OUTPUT_FILE jp_Jlosg1v.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 399 920 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 921 399 930 H SPACE SUB_CHARS 1 921 399 930 E SPACE SUB_CHARS 1 921 399 930 - SPACE STRAND 28 924 31 COLOUR_TEXT_REGION 28 924 31 924 51 STRAND 38 924 42 COLOUR_TEXT_REGION 38 924 42 924 51 STRAND 288 924 296 COLOUR_TEXT_REGION 288 924 296 924 51 STRAND 299 924 301 COLOUR_TEXT_REGION 299 924 301 924 51 STRAND 307 924 311 COLOUR_TEXT_REGION 307 924 311 924 51 STRAND 374 924 374 COLOUR_TEXT_REGION 374 924 374 924 51 STRAND 382 924 383 COLOUR_TEXT_REGION 382 924 383 924 51 STRAND 393 924 397 COLOUR_TEXT_REGION 393 924 397 924 51 HELIX 14 924 23 COLOUR_TEXT_REGION 14 924 23 924 50 HELIX 44 924 52 COLOUR_TEXT_REGION 44 924 52 924 50 HELIX 87 924 97 COLOUR_TEXT_REGION 87 924 97 924 50 HELIX 103 924 125 COLOUR_TEXT_REGION 103 924 125 924 50 HELIX 133 924 149 COLOUR_TEXT_REGION 133 924 149 924 50 HELIX 157 924 166 COLOUR_TEXT_REGION 157 924 166 924 50 HELIX 178 924 199 COLOUR_TEXT_REGION 178 924 199 924 50 HELIX 207 924 212 COLOUR_TEXT_REGION 207 924 212 924 50 HELIX 222 924 234 COLOUR_TEXT_REGION 222 924 234 924 50 HELIX 238 924 251 COLOUR_TEXT_REGION 238 924 251 924 50 HELIX 255 924 262 COLOUR_TEXT_REGION 255 924 262 924 50 HELIX 269 924 275 COLOUR_TEXT_REGION 269 924 275 924 50 HELIX 348 924 368 COLOUR_TEXT_REGION 348 924 368 924 50 STRAND 28 929 31 COLOUR_TEXT_REGION 28 929 31 929 51 STRAND 38 929 42 COLOUR_TEXT_REGION 38 929 42 929 51 STRAND 288 929 296 COLOUR_TEXT_REGION 288 929 296 929 51 STRAND 299 929 301 COLOUR_TEXT_REGION 299 929 301 929 51 STRAND 306 929 311 COLOUR_TEXT_REGION 306 929 311 929 51 STRAND 382 929 383 COLOUR_TEXT_REGION 382 929 383 929 51 STRAND 394 929 398 COLOUR_TEXT_REGION 394 929 398 929 51 HELIX 14 929 23 COLOUR_TEXT_REGION 14 929 23 929 50 HELIX 44 929 52 COLOUR_TEXT_REGION 44 929 52 929 50 HELIX 89 929 97 COLOUR_TEXT_REGION 89 929 97 929 50 HELIX 103 929 126 COLOUR_TEXT_REGION 103 929 126 929 50 HELIX 133 929 149 COLOUR_TEXT_REGION 133 929 149 929 50 HELIX 157 929 168 COLOUR_TEXT_REGION 157 929 168 929 50 HELIX 178 929 198 COLOUR_TEXT_REGION 178 929 198 929 50 HELIX 206 929 212 COLOUR_TEXT_REGION 206 929 212 929 50 HELIX 222 929 234 COLOUR_TEXT_REGION 222 929 234 929 50 HELIX 237 929 252 COLOUR_TEXT_REGION 237 929 252 929 50 HELIX 255 929 262 COLOUR_TEXT_REGION 255 929 262 929 50 HELIX 268 929 277 COLOUR_TEXT_REGION 268 929 277 929 50 HELIX 347 929 368 COLOUR_TEXT_REGION 347 929 368 929 50 STRAND 28 930 31 COLOUR_TEXT_REGION 28 930 31 930 51 STRAND 37 930 42 COLOUR_TEXT_REGION 37 930 42 930 51 STRAND 115 930 119 COLOUR_TEXT_REGION 115 930 119 930 51 STRAND 134 930 136 COLOUR_TEXT_REGION 134 930 136 930 51 STRAND 270 930 274 COLOUR_TEXT_REGION 270 930 274 930 51 STRAND 288 930 297 COLOUR_TEXT_REGION 288 930 297 930 51 STRAND 300 930 301 COLOUR_TEXT_REGION 300 930 301 930 51 STRAND 313 930 314 COLOUR_TEXT_REGION 313 930 314 930 51 STRAND 373 930 374 COLOUR_TEXT_REGION 373 930 374 930 51 STRAND 382 930 384 COLOUR_TEXT_REGION 382 930 384 930 51 STRAND 393 930 394 COLOUR_TEXT_REGION 393 930 394 930 51 HELIX 15 930 24 COLOUR_TEXT_REGION 15 930 24 930 50 HELIX 44 930 51 COLOUR_TEXT_REGION 44 930 51 930 50 HELIX 87 930 98 COLOUR_TEXT_REGION 87 930 98 930 50 HELIX 102 930 109 COLOUR_TEXT_REGION 102 930 109 930 50 HELIX 139 930 139 COLOUR_TEXT_REGION 139 930 139 930 50 HELIX 143 930 148 COLOUR_TEXT_REGION 143 930 148 930 50 HELIX 159 930 163 COLOUR_TEXT_REGION 159 930 163 930 50 HELIX 180 930 200 COLOUR_TEXT_REGION 180 930 200 930 50 HELIX 208 930 213 COLOUR_TEXT_REGION 208 930 213 930 50 HELIX 222 930 234 COLOUR_TEXT_REGION 222 930 234 930 50 HELIX 239 930 251 COLOUR_TEXT_REGION 239 930 251 930 50 HELIX 256 930 263 COLOUR_TEXT_REGION 256 930 263 930 50 HELIX 349 930 368 COLOUR_TEXT_REGION 349 930 368 930 50