SILENT_MODE BLOCK_FILE jp_n4wvjMr.concise.blc MAX_NSEQ 550 MAX_INPUT_LEN 552 OUTPUT_FILE jp_n4wvjMr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 102 539 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 540 102 549 H SPACE SUB_CHARS 1 540 102 549 E SPACE SUB_CHARS 1 540 102 549 - SPACE STRAND 73 543 73 COLOUR_TEXT_REGION 73 543 73 543 51 HELIX 9 543 21 COLOUR_TEXT_REGION 9 543 21 543 50 HELIX 25 543 34 COLOUR_TEXT_REGION 25 543 34 543 50 HELIX 38 543 56 COLOUR_TEXT_REGION 38 543 56 543 50 HELIX 61 543 68 COLOUR_TEXT_REGION 61 543 68 543 50 HELIX 74 543 82 COLOUR_TEXT_REGION 74 543 82 543 50 HELIX 87 543 96 COLOUR_TEXT_REGION 87 543 96 543 50 HELIX 9 548 21 COLOUR_TEXT_REGION 9 548 21 548 50 HELIX 25 548 35 COLOUR_TEXT_REGION 25 548 35 548 50 HELIX 38 548 56 COLOUR_TEXT_REGION 38 548 56 548 50 HELIX 61 548 68 COLOUR_TEXT_REGION 61 548 68 548 50 HELIX 74 548 82 COLOUR_TEXT_REGION 74 548 82 548 50 HELIX 87 548 96 COLOUR_TEXT_REGION 87 548 96 548 50 STRAND 72 549 75 COLOUR_TEXT_REGION 72 549 75 549 51 HELIX 12 549 21 COLOUR_TEXT_REGION 12 549 21 549 50 HELIX 25 549 33 COLOUR_TEXT_REGION 25 549 33 549 50 HELIX 38 549 56 COLOUR_TEXT_REGION 38 549 56 549 50 HELIX 61 549 68 COLOUR_TEXT_REGION 61 549 68 549 50 HELIX 76 549 82 COLOUR_TEXT_REGION 76 549 82 549 50 HELIX 87 549 96 COLOUR_TEXT_REGION 87 549 96 549 50