SILENT_MODE
BLOCK_FILE jp_YLAt4jc.concise.blc
MAX_NSEQ 329
MAX_INPUT_LEN 331
OUTPUT_FILE jp_YLAt4jc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 77 318   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 319 77 328 H SPACE
SUB_CHARS 1 319 77 328 E SPACE
SUB_CHARS 1 319 77 328 - SPACE
STRAND 3 322 4
COLOUR_TEXT_REGION 3 322 4 322 51
HELIX 17 322 30
COLOUR_TEXT_REGION 17 322 30 322 50
HELIX 45 322 50
COLOUR_TEXT_REGION 45 322 50 322 50
HELIX 53 322 60
COLOUR_TEXT_REGION 53 322 60 322 50
HELIX 64 322 75
COLOUR_TEXT_REGION 64 322 75 322 50
STRAND 3 327 4
COLOUR_TEXT_REGION 3 327 4 327 51
HELIX 17 327 30
COLOUR_TEXT_REGION 17 327 30 327 50
HELIX 45 327 50
COLOUR_TEXT_REGION 45 327 50 327 50
HELIX 53 327 60
COLOUR_TEXT_REGION 53 327 60 327 50
HELIX 64 327 75
COLOUR_TEXT_REGION 64 327 75 327 50
STRAND 3 328 3
COLOUR_TEXT_REGION 3 328 3 328 51
HELIX 17 328 29
COLOUR_TEXT_REGION 17 328 29 328 50
HELIX 45 328 50
COLOUR_TEXT_REGION 45 328 50 328 50
HELIX 53 328 59
COLOUR_TEXT_REGION 53 328 59 328 50
HELIX 65 328 75
COLOUR_TEXT_REGION 65 328 75 328 50