SILENT_MODE BLOCK_FILE jp_e6CHGqw.concise.blc MAX_NSEQ 423 MAX_INPUT_LEN 425 OUTPUT_FILE jp_e6CHGqw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 114 412 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 413 114 422 H SPACE SUB_CHARS 1 413 114 422 E SPACE SUB_CHARS 1 413 114 422 - SPACE STRAND 11 416 17 COLOUR_TEXT_REGION 11 416 17 416 51 STRAND 57 416 59 COLOUR_TEXT_REGION 57 416 59 416 51 STRAND 77 416 83 COLOUR_TEXT_REGION 77 416 83 416 51 STRAND 89 416 90 COLOUR_TEXT_REGION 89 416 90 416 51 HELIX 42 416 51 COLOUR_TEXT_REGION 42 416 51 416 50 HELIX 97 416 110 COLOUR_TEXT_REGION 97 416 110 416 50 STRAND 11 421 16 COLOUR_TEXT_REGION 11 421 16 421 51 STRAND 57 421 58 COLOUR_TEXT_REGION 57 421 58 421 51 STRAND 77 421 83 COLOUR_TEXT_REGION 77 421 83 421 51 STRAND 89 421 91 COLOUR_TEXT_REGION 89 421 91 421 51 HELIX 42 421 51 COLOUR_TEXT_REGION 42 421 51 421 50 HELIX 97 421 110 COLOUR_TEXT_REGION 97 421 110 421 50 STRAND 11 422 18 COLOUR_TEXT_REGION 11 422 18 422 51 STRAND 56 422 60 COLOUR_TEXT_REGION 56 422 60 422 51 STRAND 77 422 83 COLOUR_TEXT_REGION 77 422 83 422 51 HELIX 42 422 51 COLOUR_TEXT_REGION 42 422 51 422 50 HELIX 97 422 109 COLOUR_TEXT_REGION 97 422 109 422 50