SILENT_MODE BLOCK_FILE jp_SDqmKO1.concise.blc MAX_NSEQ 824 MAX_INPUT_LEN 826 OUTPUT_FILE jp_SDqmKO1.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 145 813 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 814 145 823 H SPACE SUB_CHARS 1 814 145 823 E SPACE SUB_CHARS 1 814 145 823 - SPACE STRAND 3 817 7 COLOUR_TEXT_REGION 3 817 7 817 51 STRAND 10 817 15 COLOUR_TEXT_REGION 10 817 15 817 51 STRAND 18 817 21 COLOUR_TEXT_REGION 18 817 21 817 51 STRAND 26 817 33 COLOUR_TEXT_REGION 26 817 33 817 51 STRAND 73 817 76 COLOUR_TEXT_REGION 73 817 76 817 51 STRAND 121 817 125 COLOUR_TEXT_REGION 121 817 125 817 51 STRAND 128 817 135 COLOUR_TEXT_REGION 128 817 135 817 51 STRAND 139 817 144 COLOUR_TEXT_REGION 139 817 144 817 51 HELIX 39 817 50 COLOUR_TEXT_REGION 39 817 50 817 50 HELIX 99 817 115 COLOUR_TEXT_REGION 99 817 115 817 50 STRAND 2 822 7 COLOUR_TEXT_REGION 2 822 7 822 51 STRAND 11 822 15 COLOUR_TEXT_REGION 11 822 15 822 51 STRAND 18 822 21 COLOUR_TEXT_REGION 18 822 21 822 51 STRAND 26 822 33 COLOUR_TEXT_REGION 26 822 33 822 51 STRAND 68 822 68 COLOUR_TEXT_REGION 68 822 68 822 51 STRAND 73 822 76 COLOUR_TEXT_REGION 73 822 76 822 51 STRAND 121 822 125 COLOUR_TEXT_REGION 121 822 125 822 51 STRAND 129 822 134 COLOUR_TEXT_REGION 129 822 134 822 51 STRAND 140 822 144 COLOUR_TEXT_REGION 140 822 144 822 51 HELIX 39 822 50 COLOUR_TEXT_REGION 39 822 50 822 50 HELIX 62 822 67 COLOUR_TEXT_REGION 62 822 67 822 50 HELIX 99 822 115 COLOUR_TEXT_REGION 99 822 115 822 50 STRAND 3 823 8 COLOUR_TEXT_REGION 3 823 8 823 51 STRAND 10 823 15 COLOUR_TEXT_REGION 10 823 15 823 51 STRAND 18 823 22 COLOUR_TEXT_REGION 18 823 22 823 51 STRAND 27 823 33 COLOUR_TEXT_REGION 27 823 33 823 51 STRAND 73 823 76 COLOUR_TEXT_REGION 73 823 76 823 51 STRAND 127 823 135 COLOUR_TEXT_REGION 127 823 135 823 51 STRAND 139 823 144 COLOUR_TEXT_REGION 139 823 144 823 51 HELIX 39 823 50 COLOUR_TEXT_REGION 39 823 50 823 50 HELIX 99 823 115 COLOUR_TEXT_REGION 99 823 115 823 50 HELIX 125 823 126 COLOUR_TEXT_REGION 125 823 126 823 50