SILENT_MODE
BLOCK_FILE jp_bPQK0Le.concise.blc
MAX_NSEQ 902
MAX_INPUT_LEN 904
OUTPUT_FILE jp_bPQK0Le.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 141 891   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 892 141 901 H SPACE
SUB_CHARS 1 892 141 901 E SPACE
SUB_CHARS 1 892 141 901 - SPACE
STRAND 31 895 35
COLOUR_TEXT_REGION 31 895 35 895 51
STRAND 113 895 120
COLOUR_TEXT_REGION 113 895 120 895 51
STRAND 125 895 131
COLOUR_TEXT_REGION 125 895 131 895 51
STRAND 133 895 133
COLOUR_TEXT_REGION 133 895 133 895 51
HELIX 12 895 25
COLOUR_TEXT_REGION 12 895 25 895 50
HELIX 38 895 58
COLOUR_TEXT_REGION 38 895 58 895 50
HELIX 65 895 89
COLOUR_TEXT_REGION 65 895 89 895 50
STRAND 30 900 35
COLOUR_TEXT_REGION 30 900 35 900 51
STRAND 113 900 120
COLOUR_TEXT_REGION 113 900 120 900 51
STRAND 125 900 130
COLOUR_TEXT_REGION 125 900 130 900 51
HELIX 12 900 25
COLOUR_TEXT_REGION 12 900 25 900 50
HELIX 38 900 57
COLOUR_TEXT_REGION 38 900 57 900 50
HELIX 65 900 88
COLOUR_TEXT_REGION 65 900 88 900 50
STRAND 32 901 35
COLOUR_TEXT_REGION 32 901 35 901 51
STRAND 111 901 120
COLOUR_TEXT_REGION 111 901 120 901 51
STRAND 125 901 135
COLOUR_TEXT_REGION 125 901 135 901 51
HELIX 12 901 25
COLOUR_TEXT_REGION 12 901 25 901 50
HELIX 38 901 59
COLOUR_TEXT_REGION 38 901 59 901 50
HELIX 65 901 90
COLOUR_TEXT_REGION 65 901 90 901 50