SILENT_MODE BLOCK_FILE jp_CZS5sVT.concise.blc MAX_NSEQ 754 MAX_INPUT_LEN 756 OUTPUT_FILE jp_CZS5sVT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 100 743 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 744 100 753 H SPACE SUB_CHARS 1 744 100 753 E SPACE SUB_CHARS 1 744 100 753 - SPACE STRAND 28 747 36 COLOUR_TEXT_REGION 28 747 36 747 51 STRAND 42 747 49 COLOUR_TEXT_REGION 42 747 49 747 51 STRAND 82 747 92 COLOUR_TEXT_REGION 82 747 92 747 51 HELIX 3 747 20 COLOUR_TEXT_REGION 3 747 20 747 50 HELIX 55 747 77 COLOUR_TEXT_REGION 55 747 77 747 50 HELIX 96 747 97 COLOUR_TEXT_REGION 96 747 97 747 50 STRAND 29 752 36 COLOUR_TEXT_REGION 29 752 36 752 51 STRAND 42 752 49 COLOUR_TEXT_REGION 42 752 49 752 51 STRAND 83 752 92 COLOUR_TEXT_REGION 83 752 92 752 51 HELIX 3 752 20 COLOUR_TEXT_REGION 3 752 20 752 50 HELIX 55 752 67 COLOUR_TEXT_REGION 55 752 67 752 50 HELIX 70 752 76 COLOUR_TEXT_REGION 70 752 76 752 50 HELIX 95 752 97 COLOUR_TEXT_REGION 95 752 97 752 50 STRAND 28 753 36 COLOUR_TEXT_REGION 28 753 36 753 51 STRAND 42 753 49 COLOUR_TEXT_REGION 42 753 49 753 51 STRAND 82 753 94 COLOUR_TEXT_REGION 82 753 94 753 51 HELIX 2 753 20 COLOUR_TEXT_REGION 2 753 20 753 50 HELIX 55 753 78 COLOUR_TEXT_REGION 55 753 78 753 50