SILENT_MODE
BLOCK_FILE jp_UyjBTFs.concise.blc
MAX_NSEQ 641
MAX_INPUT_LEN 643
OUTPUT_FILE jp_UyjBTFs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 105 630   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 631 105 640 H SPACE
SUB_CHARS 1 631 105 640 E SPACE
SUB_CHARS 1 631 105 640 - SPACE
HELIX 5 634 8
COLOUR_TEXT_REGION 5 634 8 634 50
HELIX 11 634 22
COLOUR_TEXT_REGION 11 634 22 634 50
HELIX 29 634 45
COLOUR_TEXT_REGION 29 634 45 634 50
HELIX 51 634 61
COLOUR_TEXT_REGION 51 634 61 634 50
HELIX 70 634 86
COLOUR_TEXT_REGION 70 634 86 634 50
HELIX 97 634 100
COLOUR_TEXT_REGION 97 634 100 634 50
HELIX 5 639 8
COLOUR_TEXT_REGION 5 639 8 639 50
HELIX 12 639 21
COLOUR_TEXT_REGION 12 639 21 639 50
HELIX 29 639 44
COLOUR_TEXT_REGION 29 639 44 639 50
HELIX 50 639 61
COLOUR_TEXT_REGION 50 639 61 639 50
HELIX 70 639 86
COLOUR_TEXT_REGION 70 639 86 639 50
HELIX 97 639 100
COLOUR_TEXT_REGION 97 639 100 639 50
HELIX 4 640 8
COLOUR_TEXT_REGION 4 640 8 640 50
HELIX 10 640 23
COLOUR_TEXT_REGION 10 640 23 640 50
HELIX 29 640 46
COLOUR_TEXT_REGION 29 640 46 640 50
HELIX 51 640 61
COLOUR_TEXT_REGION 51 640 61 640 50
HELIX 69 640 86
COLOUR_TEXT_REGION 69 640 86 640 50
HELIX 98 640 98
COLOUR_TEXT_REGION 98 640 98 640 50