SILENT_MODE BLOCK_FILE jp_iW7yCxf.concise.blc MAX_NSEQ 180 MAX_INPUT_LEN 182 OUTPUT_FILE jp_iW7yCxf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 169 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 170 101 179 H SPACE SUB_CHARS 1 170 101 179 E SPACE SUB_CHARS 1 170 101 179 - SPACE STRAND 3 173 6 COLOUR_TEXT_REGION 3 173 6 173 51 STRAND 17 173 25 COLOUR_TEXT_REGION 17 173 25 173 51 STRAND 35 173 39 COLOUR_TEXT_REGION 35 173 39 173 51 STRAND 72 173 81 COLOUR_TEXT_REGION 72 173 81 173 51 STRAND 95 173 99 COLOUR_TEXT_REGION 95 173 99 173 51 HELIX 7 173 11 COLOUR_TEXT_REGION 7 173 11 173 50 HELIX 52 173 52 COLOUR_TEXT_REGION 52 173 52 173 50 HELIX 54 173 63 COLOUR_TEXT_REGION 54 173 63 173 50 STRAND 3 178 10 COLOUR_TEXT_REGION 3 178 10 178 51 STRAND 16 178 25 COLOUR_TEXT_REGION 16 178 25 178 51 STRAND 35 178 39 COLOUR_TEXT_REGION 35 178 39 178 51 STRAND 72 178 81 COLOUR_TEXT_REGION 72 178 81 178 51 STRAND 95 178 99 COLOUR_TEXT_REGION 95 178 99 178 51 HELIX 55 178 63 COLOUR_TEXT_REGION 55 178 63 178 50 STRAND 17 179 24 COLOUR_TEXT_REGION 17 179 24 179 51 STRAND 32 179 39 COLOUR_TEXT_REGION 32 179 39 179 51 STRAND 72 179 81 COLOUR_TEXT_REGION 72 179 81 179 51 STRAND 95 179 99 COLOUR_TEXT_REGION 95 179 99 179 51 HELIX 3 179 12 COLOUR_TEXT_REGION 3 179 12 179 50 HELIX 47 179 54 COLOUR_TEXT_REGION 47 179 54 179 50 HELIX 57 179 63 COLOUR_TEXT_REGION 57 179 63 179 50