SILENT_MODE
BLOCK_FILE jp_HFI2QnU.concise.blc
MAX_NSEQ 1139
MAX_INPUT_LEN 1141
OUTPUT_FILE jp_HFI2QnU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 114 1128   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1129 114 1138 H SPACE
SUB_CHARS 1 1129 114 1138 E SPACE
SUB_CHARS 1 1129 114 1138 - SPACE
STRAND 3 1132 10
COLOUR_TEXT_REGION 3 1132 10 1132 51
STRAND 18 1132 28
COLOUR_TEXT_REGION 18 1132 28 1132 51
STRAND 35 1132 43
COLOUR_TEXT_REGION 35 1132 43 1132 51
STRAND 48 1132 53
COLOUR_TEXT_REGION 48 1132 53 1132 51
STRAND 68 1132 75
COLOUR_TEXT_REGION 68 1132 75 1132 51
STRAND 89 1132 98
COLOUR_TEXT_REGION 89 1132 98 1132 51
STRAND 103 1132 110
COLOUR_TEXT_REGION 103 1132 110 1132 51
STRAND 3 1137 10
COLOUR_TEXT_REGION 3 1137 10 1137 51
STRAND 18 1137 28
COLOUR_TEXT_REGION 18 1137 28 1137 51
STRAND 35 1137 43
COLOUR_TEXT_REGION 35 1137 43 1137 51
STRAND 48 1137 53
COLOUR_TEXT_REGION 48 1137 53 1137 51
STRAND 69 1137 75
COLOUR_TEXT_REGION 69 1137 75 1137 51
STRAND 90 1137 98
COLOUR_TEXT_REGION 90 1137 98 1137 51
STRAND 103 1137 110
COLOUR_TEXT_REGION 103 1137 110 1137 51
STRAND 4 1138 11
COLOUR_TEXT_REGION 4 1138 11 1138 51
STRAND 18 1138 28
COLOUR_TEXT_REGION 18 1138 28 1138 51
STRAND 35 1138 42
COLOUR_TEXT_REGION 35 1138 42 1138 51
STRAND 49 1138 51
COLOUR_TEXT_REGION 49 1138 51 1138 51
STRAND 68 1138 76
COLOUR_TEXT_REGION 68 1138 76 1138 51
STRAND 89 1138 98
COLOUR_TEXT_REGION 89 1138 98 1138 51
STRAND 102 1138 109
COLOUR_TEXT_REGION 102 1138 109 1138 51