SILENT_MODE BLOCK_FILE jp_XzqcVDS.concise.blc MAX_NSEQ 77 MAX_INPUT_LEN 79 OUTPUT_FILE jp_XzqcVDS.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 142 66 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 67 142 76 H SPACE SUB_CHARS 1 67 142 76 E SPACE SUB_CHARS 1 67 142 76 - SPACE HELIX 17 70 35 COLOUR_TEXT_REGION 17 70 35 70 50 HELIX 41 70 65 COLOUR_TEXT_REGION 41 70 65 70 50 HELIX 74 70 100 COLOUR_TEXT_REGION 74 70 100 70 50 HELIX 105 70 140 COLOUR_TEXT_REGION 105 70 140 70 50 HELIX 17 75 36 COLOUR_TEXT_REGION 17 75 36 75 50 HELIX 40 75 65 COLOUR_TEXT_REGION 40 75 65 75 50 HELIX 73 75 100 COLOUR_TEXT_REGION 73 75 100 75 50 HELIX 105 75 140 COLOUR_TEXT_REGION 105 75 140 75 50 STRAND 77 76 78 COLOUR_TEXT_REGION 77 76 78 76 51 HELIX 16 76 33 COLOUR_TEXT_REGION 16 76 33 76 50 HELIX 43 76 64 COLOUR_TEXT_REGION 43 76 64 76 50 HELIX 79 76 84 COLOUR_TEXT_REGION 79 76 84 76 50 HELIX 87 76 100 COLOUR_TEXT_REGION 87 76 100 76 50 HELIX 105 76 140 COLOUR_TEXT_REGION 105 76 140 76 50