SILENT_MODE
BLOCK_FILE jp_Lmy3Gmq.concise.blc
MAX_NSEQ 961
MAX_INPUT_LEN 963
OUTPUT_FILE jp_Lmy3Gmq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 89 950   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 951 89 960 H SPACE
SUB_CHARS 1 951 89 960 E SPACE
SUB_CHARS 1 951 89 960 - SPACE
STRAND 38 954 39
COLOUR_TEXT_REGION 38 954 39 954 51
HELIX 12 954 21
COLOUR_TEXT_REGION 12 954 21 954 50
HELIX 29 954 33
COLOUR_TEXT_REGION 29 954 33 954 50
HELIX 45 954 54
COLOUR_TEXT_REGION 45 954 54 954 50
HELIX 67 954 86
COLOUR_TEXT_REGION 67 954 86 954 50
STRAND 31 959 33
COLOUR_TEXT_REGION 31 959 33 959 51
STRAND 38 959 40
COLOUR_TEXT_REGION 38 959 40 959 51
HELIX 12 959 21
COLOUR_TEXT_REGION 12 959 21 959 50
HELIX 30 959 30
COLOUR_TEXT_REGION 30 959 30 959 50
HELIX 45 959 54
COLOUR_TEXT_REGION 45 959 54 959 50
HELIX 67 959 87
COLOUR_TEXT_REGION 67 959 87 959 50
HELIX 12 960 21
COLOUR_TEXT_REGION 12 960 21 960 50
HELIX 29 960 34
COLOUR_TEXT_REGION 29 960 34 960 50
HELIX 44 960 55
COLOUR_TEXT_REGION 44 960 55 960 50
HELIX 67 960 86
COLOUR_TEXT_REGION 67 960 86 960 50