SILENT_MODE BLOCK_FILE jp_RHSBUiC.concise.blc MAX_NSEQ 498 MAX_INPUT_LEN 500 OUTPUT_FILE jp_RHSBUiC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 181 487 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 488 181 497 H SPACE SUB_CHARS 1 488 181 497 E SPACE SUB_CHARS 1 488 181 497 - SPACE STRAND 5 491 13 COLOUR_TEXT_REGION 5 491 13 491 51 STRAND 21 491 27 COLOUR_TEXT_REGION 21 491 27 491 51 STRAND 31 491 37 COLOUR_TEXT_REGION 31 491 37 491 51 STRAND 43 491 46 COLOUR_TEXT_REGION 43 491 46 491 51 STRAND 93 491 102 COLOUR_TEXT_REGION 93 491 102 491 51 STRAND 114 491 115 COLOUR_TEXT_REGION 114 491 115 491 51 STRAND 123 491 126 COLOUR_TEXT_REGION 123 491 126 491 51 STRAND 133 491 134 COLOUR_TEXT_REGION 133 491 134 491 51 HELIX 50 491 52 COLOUR_TEXT_REGION 50 491 52 491 50 HELIX 60 491 85 COLOUR_TEXT_REGION 60 491 85 491 50 HELIX 139 491 161 COLOUR_TEXT_REGION 139 491 161 491 50 HELIX 164 491 179 COLOUR_TEXT_REGION 164 491 179 491 50 STRAND 5 496 13 COLOUR_TEXT_REGION 5 496 13 496 51 STRAND 21 496 28 COLOUR_TEXT_REGION 21 496 28 496 51 STRAND 31 496 37 COLOUR_TEXT_REGION 31 496 37 496 51 STRAND 43 496 46 COLOUR_TEXT_REGION 43 496 46 496 51 STRAND 93 496 103 COLOUR_TEXT_REGION 93 496 103 496 51 STRAND 109 496 110 COLOUR_TEXT_REGION 109 496 110 496 51 STRAND 113 496 116 COLOUR_TEXT_REGION 113 496 116 496 51 STRAND 125 496 126 COLOUR_TEXT_REGION 125 496 126 496 51 STRAND 132 496 135 COLOUR_TEXT_REGION 132 496 135 496 51 HELIX 60 496 85 COLOUR_TEXT_REGION 60 496 85 496 50 HELIX 121 496 124 COLOUR_TEXT_REGION 121 496 124 496 50 HELIX 139 496 148 COLOUR_TEXT_REGION 139 496 148 496 50 HELIX 152 496 161 COLOUR_TEXT_REGION 152 496 161 496 50 HELIX 164 496 179 COLOUR_TEXT_REGION 164 496 179 496 50 STRAND 6 497 12 COLOUR_TEXT_REGION 6 497 12 497 51 STRAND 23 497 27 COLOUR_TEXT_REGION 23 497 27 497 51 STRAND 31 497 36 COLOUR_TEXT_REGION 31 497 36 497 51 STRAND 123 497 126 COLOUR_TEXT_REGION 123 497 126 497 51 HELIX 44 497 53 COLOUR_TEXT_REGION 44 497 53 497 50 HELIX 62 497 85 COLOUR_TEXT_REGION 62 497 85 497 50 HELIX 92 497 99 COLOUR_TEXT_REGION 92 497 99 497 50 HELIX 138 497 161 COLOUR_TEXT_REGION 138 497 161 497 50 HELIX 164 497 179 COLOUR_TEXT_REGION 164 497 179 497 50