SILENT_MODE
BLOCK_FILE jp_azszHUc.concise.blc
MAX_NSEQ 824
MAX_INPUT_LEN 826
OUTPUT_FILE jp_azszHUc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 142 813   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 814 142 823 H SPACE
SUB_CHARS 1 814 142 823 E SPACE
SUB_CHARS 1 814 142 823 - SPACE
HELIX 4 817 20
COLOUR_TEXT_REGION 4 817 20 817 50
HELIX 27 817 34
COLOUR_TEXT_REGION 27 817 34 817 50
HELIX 40 817 46
COLOUR_TEXT_REGION 40 817 46 817 50
HELIX 51 817 64
COLOUR_TEXT_REGION 51 817 64 817 50
HELIX 82 817 98
COLOUR_TEXT_REGION 82 817 98 817 50
HELIX 105 817 113
COLOUR_TEXT_REGION 105 817 113 817 50
HELIX 119 817 126
COLOUR_TEXT_REGION 119 817 126 817 50
HELIX 131 817 139
COLOUR_TEXT_REGION 131 817 139 817 50
HELIX 4 822 20
COLOUR_TEXT_REGION 4 822 20 822 50
HELIX 27 822 34
COLOUR_TEXT_REGION 27 822 34 822 50
HELIX 40 822 46
COLOUR_TEXT_REGION 40 822 46 822 50
HELIX 51 822 64
COLOUR_TEXT_REGION 51 822 64 822 50
HELIX 82 822 98
COLOUR_TEXT_REGION 82 822 98 822 50
HELIX 105 822 114
COLOUR_TEXT_REGION 105 822 114 822 50
HELIX 119 822 126
COLOUR_TEXT_REGION 119 822 126 822 50
HELIX 131 822 139
COLOUR_TEXT_REGION 131 822 139 822 50
HELIX 4 823 19
COLOUR_TEXT_REGION 4 823 19 823 50
HELIX 27 823 34
COLOUR_TEXT_REGION 27 823 34 823 50
HELIX 39 823 46
COLOUR_TEXT_REGION 39 823 46 823 50
HELIX 51 823 63
COLOUR_TEXT_REGION 51 823 63 823 50
HELIX 82 823 98
COLOUR_TEXT_REGION 82 823 98 823 50
HELIX 105 823 113
COLOUR_TEXT_REGION 105 823 113 823 50
HELIX 119 823 126
COLOUR_TEXT_REGION 119 823 126 823 50
HELIX 131 823 139
COLOUR_TEXT_REGION 131 823 139 823 50