SILENT_MODE BLOCK_FILE jp_3m0bcRt.concise.blc MAX_NSEQ 1071 MAX_INPUT_LEN 1073 OUTPUT_FILE jp_3m0bcRt.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 233 1060 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1061 233 1070 H SPACE SUB_CHARS 1 1061 233 1070 E SPACE SUB_CHARS 1 1061 233 1070 - SPACE STRAND 2 1064 7 COLOUR_TEXT_REGION 2 1064 7 1064 51 STRAND 34 1064 38 COLOUR_TEXT_REGION 34 1064 38 1064 51 STRAND 66 1064 71 COLOUR_TEXT_REGION 66 1064 71 1064 51 STRAND 128 1064 131 COLOUR_TEXT_REGION 128 1064 131 1064 51 STRAND 167 1064 167 COLOUR_TEXT_REGION 167 1064 167 1064 51 HELIX 23 1064 30 COLOUR_TEXT_REGION 23 1064 30 1064 50 HELIX 46 1064 61 COLOUR_TEXT_REGION 46 1064 61 1064 50 HELIX 107 1064 121 COLOUR_TEXT_REGION 107 1064 121 1064 50 HELIX 148 1064 161 COLOUR_TEXT_REGION 148 1064 161 1064 50 HELIX 168 1064 179 COLOUR_TEXT_REGION 168 1064 179 1064 50 HELIX 198 1064 214 COLOUR_TEXT_REGION 198 1064 214 1064 50 STRAND 2 1069 7 COLOUR_TEXT_REGION 2 1069 7 1069 51 STRAND 34 1069 38 COLOUR_TEXT_REGION 34 1069 38 1069 51 STRAND 66 1069 72 COLOUR_TEXT_REGION 66 1069 72 1069 51 STRAND 128 1069 131 COLOUR_TEXT_REGION 128 1069 131 1069 51 STRAND 166 1069 168 COLOUR_TEXT_REGION 166 1069 168 1069 51 HELIX 23 1069 30 COLOUR_TEXT_REGION 23 1069 30 1069 50 HELIX 45 1069 60 COLOUR_TEXT_REGION 45 1069 60 1069 50 HELIX 107 1069 121 COLOUR_TEXT_REGION 107 1069 121 1069 50 HELIX 148 1069 161 COLOUR_TEXT_REGION 148 1069 161 1069 50 HELIX 170 1069 179 COLOUR_TEXT_REGION 170 1069 179 1069 50 HELIX 198 1069 214 COLOUR_TEXT_REGION 198 1069 214 1069 50 STRAND 2 1070 7 COLOUR_TEXT_REGION 2 1070 7 1070 51 STRAND 10 1070 10 COLOUR_TEXT_REGION 10 1070 10 1070 51 STRAND 35 1070 39 COLOUR_TEXT_REGION 35 1070 39 1070 51 STRAND 66 1070 71 COLOUR_TEXT_REGION 66 1070 71 1070 51 STRAND 128 1070 131 COLOUR_TEXT_REGION 128 1070 131 1070 51 STRAND 144 1070 145 COLOUR_TEXT_REGION 144 1070 145 1070 51 HELIX 23 1070 30 COLOUR_TEXT_REGION 23 1070 30 1070 50 HELIX 46 1070 51 COLOUR_TEXT_REGION 46 1070 51 1070 50 HELIX 54 1070 61 COLOUR_TEXT_REGION 54 1070 61 1070 50 HELIX 106 1070 122 COLOUR_TEXT_REGION 106 1070 122 1070 50 HELIX 149 1070 161 COLOUR_TEXT_REGION 149 1070 161 1070 50 HELIX 167 1070 179 COLOUR_TEXT_REGION 167 1070 179 1070 50 HELIX 182 1070 187 COLOUR_TEXT_REGION 182 1070 187 1070 50 HELIX 198 1070 214 COLOUR_TEXT_REGION 198 1070 214 1070 50