SILENT_MODE BLOCK_FILE jp_ujaxDte.concise.blc MAX_NSEQ 247 MAX_INPUT_LEN 249 OUTPUT_FILE jp_ujaxDte.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 120 236 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 237 120 246 H SPACE SUB_CHARS 1 237 120 246 E SPACE SUB_CHARS 1 237 120 246 - SPACE STRAND 32 240 37 COLOUR_TEXT_REGION 32 240 37 240 51 STRAND 42 240 47 COLOUR_TEXT_REGION 42 240 47 240 51 STRAND 54 240 61 COLOUR_TEXT_REGION 54 240 61 240 51 STRAND 92 240 98 COLOUR_TEXT_REGION 92 240 98 240 51 HELIX 9 240 21 COLOUR_TEXT_REGION 9 240 21 240 50 HELIX 72 240 80 COLOUR_TEXT_REGION 72 240 80 240 50 HELIX 106 240 116 COLOUR_TEXT_REGION 106 240 116 240 50 STRAND 32 245 37 COLOUR_TEXT_REGION 32 245 37 245 51 STRAND 41 245 47 COLOUR_TEXT_REGION 41 245 47 245 51 STRAND 54 245 61 COLOUR_TEXT_REGION 54 245 61 245 51 STRAND 93 245 98 COLOUR_TEXT_REGION 93 245 98 245 51 HELIX 9 245 21 COLOUR_TEXT_REGION 9 245 21 245 50 HELIX 65 245 65 COLOUR_TEXT_REGION 65 245 65 245 50 HELIX 72 245 79 COLOUR_TEXT_REGION 72 245 79 245 50 HELIX 106 245 115 COLOUR_TEXT_REGION 106 245 115 245 50 STRAND 31 246 37 COLOUR_TEXT_REGION 31 246 37 246 51 STRAND 42 246 46 COLOUR_TEXT_REGION 42 246 46 246 51 STRAND 54 246 60 COLOUR_TEXT_REGION 54 246 60 246 51 STRAND 92 246 97 COLOUR_TEXT_REGION 92 246 97 246 51 HELIX 9 246 21 COLOUR_TEXT_REGION 9 246 21 246 50 HELIX 72 246 80 COLOUR_TEXT_REGION 72 246 80 246 50 HELIX 106 246 117 COLOUR_TEXT_REGION 106 246 117 246 50