SILENT_MODE BLOCK_FILE jp_Xigaqsh.concise.blc MAX_NSEQ 189 MAX_INPUT_LEN 191 OUTPUT_FILE jp_Xigaqsh.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 173 178 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 179 173 188 H SPACE SUB_CHARS 1 179 173 188 E SPACE SUB_CHARS 1 179 173 188 - SPACE STRAND 13 182 15 COLOUR_TEXT_REGION 13 182 15 182 51 STRAND 65 182 68 COLOUR_TEXT_REGION 65 182 68 182 51 STRAND 158 182 162 COLOUR_TEXT_REGION 158 182 162 182 51 HELIX 40 182 51 COLOUR_TEXT_REGION 40 182 51 182 50 HELIX 69 182 81 COLOUR_TEXT_REGION 69 182 81 182 50 HELIX 87 182 99 COLOUR_TEXT_REGION 87 182 99 182 50 HELIX 122 182 148 COLOUR_TEXT_REGION 122 182 148 182 50 HELIX 163 182 165 COLOUR_TEXT_REGION 163 182 165 182 50 STRAND 12 187 15 COLOUR_TEXT_REGION 12 187 15 187 51 STRAND 65 187 68 COLOUR_TEXT_REGION 65 187 68 187 51 STRAND 157 187 163 COLOUR_TEXT_REGION 157 187 163 187 51 HELIX 40 187 50 COLOUR_TEXT_REGION 40 187 50 187 50 HELIX 69 187 81 COLOUR_TEXT_REGION 69 187 81 187 50 HELIX 87 187 100 COLOUR_TEXT_REGION 87 187 100 187 50 HELIX 113 187 113 COLOUR_TEXT_REGION 113 187 113 187 50 HELIX 122 187 148 COLOUR_TEXT_REGION 122 187 148 187 50 STRAND 14 188 15 COLOUR_TEXT_REGION 14 188 15 188 51 STRAND 21 188 23 COLOUR_TEXT_REGION 21 188 23 188 51 STRAND 55 188 57 COLOUR_TEXT_REGION 55 188 57 188 51 STRAND 65 188 69 COLOUR_TEXT_REGION 65 188 69 188 51 STRAND 158 188 160 COLOUR_TEXT_REGION 158 188 160 188 51 HELIX 40 188 54 COLOUR_TEXT_REGION 40 188 54 188 50 HELIX 70 188 81 COLOUR_TEXT_REGION 70 188 81 188 50 HELIX 87 188 97 COLOUR_TEXT_REGION 87 188 97 188 50 HELIX 123 188 148 COLOUR_TEXT_REGION 123 188 148 188 50 HELIX 161 188 167 COLOUR_TEXT_REGION 161 188 167 188 50