Filename Description -------- ----------- jp_2HW__nB.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_2HW__nB.als Alscript command file. Used to generate PS/PDF outputjp_2HW__nB.blast.gz PSIBLAST output (compressed) jp_2HW__nB.coils.csv The output from coils in CSV format jp_2HW__nB.coilseq.lupas_14 The output from coils using a window length of 14 jp_2HW__nB.coilseq.lupas_21 The output from coils using a window length of 21 jp_2HW__nB.coilseq.lupas_28 The output from coils using a window length of 28 jp_2HW__nB.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_2HW__nB.concise.blc A BLC file of the prediction and alignment jp_2HW__nB.concise.pdf A PDF file of the prediction and alignment jp_2HW__nB.fasta Input query sequence in FASTA format jp_2HW__nB.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_2HW__nB.hmm The HHMer2 profile of the alignment jp_2HW__nB.html A HTML file of the prediction and alignment jp_2HW__nB.input Your raw input jp_2HW__nB.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_2HW__nB.jnet The output from Jnet jp_2HW__nB.profile PSIBLAST profile jp_2HW__nB.pssm PSIBLAST PSSM in a format for Jnet jp_2HW__nB.seq Your sequence jp_2HW__nB.simple.html The brief HTML output of the query sequence and prediction only jp_2HW__nB.svg.html A Jalview generated SVG file with summary of the results.