SILENT_MODE BLOCK_FILE jp_2HW__nB.concise.blc MAX_NSEQ 668 MAX_INPUT_LEN 670 OUTPUT_FILE jp_2HW__nB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 256 657 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 658 256 667 H SPACE SUB_CHARS 1 658 256 667 E SPACE SUB_CHARS 1 658 256 667 - SPACE STRAND 9 661 14 COLOUR_TEXT_REGION 9 661 14 661 51 STRAND 32 661 33 COLOUR_TEXT_REGION 32 661 33 661 51 STRAND 46 661 52 COLOUR_TEXT_REGION 46 661 52 661 51 STRAND 57 661 60 COLOUR_TEXT_REGION 57 661 60 661 51 STRAND 85 661 89 COLOUR_TEXT_REGION 85 661 89 661 51 STRAND 103 661 103 COLOUR_TEXT_REGION 103 661 103 661 51 STRAND 169 661 176 COLOUR_TEXT_REGION 169 661 176 661 51 STRAND 180 661 186 COLOUR_TEXT_REGION 180 661 186 661 51 HELIX 67 661 81 COLOUR_TEXT_REGION 67 661 81 661 50 HELIX 104 661 122 COLOUR_TEXT_REGION 104 661 122 661 50 HELIX 125 661 144 COLOUR_TEXT_REGION 125 661 144 661 50 HELIX 149 661 166 COLOUR_TEXT_REGION 149 661 166 661 50 HELIX 210 661 219 COLOUR_TEXT_REGION 210 661 219 661 50 HELIX 222 661 237 COLOUR_TEXT_REGION 222 661 237 661 50 STRAND 10 666 14 COLOUR_TEXT_REGION 10 666 14 666 51 STRAND 31 666 36 COLOUR_TEXT_REGION 31 666 36 666 51 STRAND 46 666 52 COLOUR_TEXT_REGION 46 666 52 666 51 STRAND 56 666 60 COLOUR_TEXT_REGION 56 666 60 666 51 STRAND 85 666 90 COLOUR_TEXT_REGION 85 666 90 666 51 STRAND 95 666 97 COLOUR_TEXT_REGION 95 666 97 666 51 STRAND 169 666 176 COLOUR_TEXT_REGION 169 666 176 666 51 STRAND 180 666 186 COLOUR_TEXT_REGION 180 666 186 666 51 HELIX 68 666 80 COLOUR_TEXT_REGION 68 666 80 666 50 HELIX 103 666 122 COLOUR_TEXT_REGION 103 666 122 666 50 HELIX 125 666 134 COLOUR_TEXT_REGION 125 666 134 666 50 HELIX 136 666 144 COLOUR_TEXT_REGION 136 666 144 666 50 HELIX 150 666 165 COLOUR_TEXT_REGION 150 666 165 666 50 HELIX 211 666 219 COLOUR_TEXT_REGION 211 666 219 666 50 HELIX 222 666 238 COLOUR_TEXT_REGION 222 666 238 666 50 STRAND 9 667 14 COLOUR_TEXT_REGION 9 667 14 667 51 STRAND 46 667 52 COLOUR_TEXT_REGION 46 667 52 667 51 STRAND 57 667 60 COLOUR_TEXT_REGION 57 667 60 667 51 STRAND 86 667 87 COLOUR_TEXT_REGION 86 667 87 667 51 STRAND 102 667 104 COLOUR_TEXT_REGION 102 667 104 667 51 STRAND 169 667 176 COLOUR_TEXT_REGION 169 667 176 667 51 STRAND 180 667 185 COLOUR_TEXT_REGION 180 667 185 667 51 HELIX 66 667 85 COLOUR_TEXT_REGION 66 667 85 667 50 HELIX 107 667 123 COLOUR_TEXT_REGION 107 667 123 667 50 HELIX 125 667 144 COLOUR_TEXT_REGION 125 667 144 667 50 HELIX 149 667 166 COLOUR_TEXT_REGION 149 667 166 667 50 HELIX 209 667 236 COLOUR_TEXT_REGION 209 667 236 667 50