SILENT_MODE BLOCK_FILE jp_Y_XhgO4.concise.blc MAX_NSEQ 944 MAX_INPUT_LEN 946 OUTPUT_FILE jp_Y_XhgO4.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 354 933 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 934 354 943 H SPACE SUB_CHARS 1 934 354 943 E SPACE SUB_CHARS 1 934 354 943 - SPACE STRAND 35 937 37 COLOUR_TEXT_REGION 35 937 37 937 51 STRAND 68 937 70 COLOUR_TEXT_REGION 68 937 70 937 51 STRAND 136 937 141 COLOUR_TEXT_REGION 136 937 141 937 51 STRAND 155 937 163 COLOUR_TEXT_REGION 155 937 163 937 51 STRAND 167 937 173 COLOUR_TEXT_REGION 167 937 173 937 51 STRAND 181 937 184 COLOUR_TEXT_REGION 181 937 184 937 51 STRAND 197 937 200 COLOUR_TEXT_REGION 197 937 200 937 51 STRAND 205 937 208 COLOUR_TEXT_REGION 205 937 208 937 51 STRAND 231 937 233 COLOUR_TEXT_REGION 231 937 233 937 51 STRAND 275 937 280 COLOUR_TEXT_REGION 275 937 280 937 51 STRAND 307 937 310 COLOUR_TEXT_REGION 307 937 310 937 51 STRAND 330 937 333 COLOUR_TEXT_REGION 330 937 333 937 51 HELIX 3 937 28 COLOUR_TEXT_REGION 3 937 28 937 50 HELIX 44 937 62 COLOUR_TEXT_REGION 44 937 62 937 50 HELIX 100 937 110 COLOUR_TEXT_REGION 100 937 110 937 50 HELIX 230 937 230 COLOUR_TEXT_REGION 230 937 230 937 50 HELIX 243 937 251 COLOUR_TEXT_REGION 243 937 251 937 50 HELIX 263 937 274 COLOUR_TEXT_REGION 263 937 274 937 50 HELIX 297 937 304 COLOUR_TEXT_REGION 297 937 304 937 50 HELIX 337 937 352 COLOUR_TEXT_REGION 337 937 352 937 50 STRAND 35 942 37 COLOUR_TEXT_REGION 35 942 37 942 51 STRAND 68 942 71 COLOUR_TEXT_REGION 68 942 71 942 51 STRAND 136 942 141 COLOUR_TEXT_REGION 136 942 141 942 51 STRAND 151 942 151 COLOUR_TEXT_REGION 151 942 151 942 51 STRAND 155 942 163 COLOUR_TEXT_REGION 155 942 163 942 51 STRAND 166 942 173 COLOUR_TEXT_REGION 166 942 173 942 51 STRAND 180 942 185 COLOUR_TEXT_REGION 180 942 185 942 51 STRAND 196 942 201 COLOUR_TEXT_REGION 196 942 201 942 51 STRAND 205 942 207 COLOUR_TEXT_REGION 205 942 207 942 51 STRAND 231 942 233 COLOUR_TEXT_REGION 231 942 233 942 51 STRAND 258 942 259 COLOUR_TEXT_REGION 258 942 259 942 51 STRAND 275 942 280 COLOUR_TEXT_REGION 275 942 280 942 51 STRAND 306 942 309 COLOUR_TEXT_REGION 306 942 309 942 51 STRAND 330 942 333 COLOUR_TEXT_REGION 330 942 333 942 51 HELIX 3 942 27 COLOUR_TEXT_REGION 3 942 27 942 50 HELIX 44 942 62 COLOUR_TEXT_REGION 44 942 62 942 50 HELIX 102 942 110 COLOUR_TEXT_REGION 102 942 110 942 50 HELIX 147 942 150 COLOUR_TEXT_REGION 147 942 150 942 50 HELIX 243 942 251 COLOUR_TEXT_REGION 243 942 251 942 50 HELIX 263 942 274 COLOUR_TEXT_REGION 263 942 274 942 50 HELIX 297 942 304 COLOUR_TEXT_REGION 297 942 304 942 50 HELIX 337 942 352 COLOUR_TEXT_REGION 337 942 352 942 50 STRAND 34 943 37 COLOUR_TEXT_REGION 34 943 37 943 51 STRAND 69 943 69 COLOUR_TEXT_REGION 69 943 69 943 51 STRAND 136 943 140 COLOUR_TEXT_REGION 136 943 140 943 51 STRAND 156 943 162 COLOUR_TEXT_REGION 156 943 162 943 51 STRAND 167 943 172 COLOUR_TEXT_REGION 167 943 172 943 51 STRAND 206 943 208 COLOUR_TEXT_REGION 206 943 208 943 51 STRAND 277 943 280 COLOUR_TEXT_REGION 277 943 280 943 51 STRAND 307 943 310 COLOUR_TEXT_REGION 307 943 310 943 51 STRAND 330 943 333 COLOUR_TEXT_REGION 330 943 333 943 51 HELIX 3 943 28 COLOUR_TEXT_REGION 3 943 28 943 50 HELIX 45 943 62 COLOUR_TEXT_REGION 45 943 62 943 50 HELIX 77 943 81 COLOUR_TEXT_REGION 77 943 81 943 50 HELIX 99 943 110 COLOUR_TEXT_REGION 99 943 110 943 50 HELIX 229 943 234 COLOUR_TEXT_REGION 229 943 234 943 50 HELIX 243 943 251 COLOUR_TEXT_REGION 243 943 251 943 50 HELIX 259 943 260 COLOUR_TEXT_REGION 259 943 260 943 50 HELIX 264 943 275 COLOUR_TEXT_REGION 264 943 275 943 50 HELIX 296 943 304 COLOUR_TEXT_REGION 296 943 304 943 50 HELIX 337 943 352 COLOUR_TEXT_REGION 337 943 352 943 50