SILENT_MODE BLOCK_FILE jp_E4Ix3aB.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_E4Ix3aB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 108 17 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 18 108 27 H SPACE SUB_CHARS 1 18 108 27 E SPACE SUB_CHARS 1 18 108 27 - SPACE STRAND 25 21 31 COLOUR_TEXT_REGION 25 21 31 21 51 STRAND 34 21 34 COLOUR_TEXT_REGION 34 21 34 21 51 STRAND 47 21 52 COLOUR_TEXT_REGION 47 21 52 21 51 STRAND 57 21 61 COLOUR_TEXT_REGION 57 21 61 21 51 STRAND 77 21 82 COLOUR_TEXT_REGION 77 21 82 21 51 STRAND 87 21 90 COLOUR_TEXT_REGION 87 21 90 21 51 HELIX 5 21 19 COLOUR_TEXT_REGION 5 21 19 21 50 HELIX 35 21 42 COLOUR_TEXT_REGION 35 21 42 21 50 HELIX 66 21 74 COLOUR_TEXT_REGION 66 21 74 21 50 HELIX 95 21 106 COLOUR_TEXT_REGION 95 21 106 21 50 STRAND 25 26 31 COLOUR_TEXT_REGION 25 26 31 26 51 STRAND 33 26 36 COLOUR_TEXT_REGION 33 26 36 26 51 STRAND 47 26 52 COLOUR_TEXT_REGION 47 26 52 26 51 STRAND 57 26 61 COLOUR_TEXT_REGION 57 26 61 26 51 STRAND 77 26 82 COLOUR_TEXT_REGION 77 26 82 26 51 STRAND 87 26 90 COLOUR_TEXT_REGION 87 26 90 26 51 HELIX 5 26 19 COLOUR_TEXT_REGION 5 26 19 26 50 HELIX 37 26 41 COLOUR_TEXT_REGION 37 26 41 26 50 HELIX 66 26 74 COLOUR_TEXT_REGION 66 26 74 26 50 HELIX 95 26 106 COLOUR_TEXT_REGION 95 26 106 26 50 STRAND 28 27 31 COLOUR_TEXT_REGION 28 27 31 27 51 STRAND 47 27 52 COLOUR_TEXT_REGION 47 27 52 27 51 STRAND 57 27 61 COLOUR_TEXT_REGION 57 27 61 27 51 STRAND 76 27 82 COLOUR_TEXT_REGION 76 27 82 27 51 STRAND 87 27 91 COLOUR_TEXT_REGION 87 27 91 27 51 HELIX 4 27 18 COLOUR_TEXT_REGION 4 27 18 27 50 HELIX 34 27 42 COLOUR_TEXT_REGION 34 27 42 27 50 HELIX 66 27 74 COLOUR_TEXT_REGION 66 27 74 27 50 HELIX 95 27 106 COLOUR_TEXT_REGION 95 27 106 27 50