SILENT_MODE
BLOCK_FILE jp_yj1SCnd.concise.blc
MAX_NSEQ 825
MAX_INPUT_LEN 827
OUTPUT_FILE jp_yj1SCnd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 133 814   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 815 133 824 H SPACE
SUB_CHARS 1 815 133 824 E SPACE
SUB_CHARS 1 815 133 824 - SPACE
STRAND 15 818 21
COLOUR_TEXT_REGION 15 818 21 818 51
STRAND 26 818 34
COLOUR_TEXT_REGION 26 818 34 818 51
STRAND 48 818 53
COLOUR_TEXT_REGION 48 818 53 818 51
STRAND 69 818 71
COLOUR_TEXT_REGION 69 818 71 818 51
STRAND 91 818 93
COLOUR_TEXT_REGION 91 818 93 818 51
STRAND 106 818 109
COLOUR_TEXT_REGION 106 818 109 818 51
STRAND 112 818 114
COLOUR_TEXT_REGION 112 818 114 818 51
STRAND 119 818 123
COLOUR_TEXT_REGION 119 818 123 818 51
STRAND 128 818 130
COLOUR_TEXT_REGION 128 818 130 818 51
HELIX 38 818 41
COLOUR_TEXT_REGION 38 818 41 818 50
HELIX 57 818 66
COLOUR_TEXT_REGION 57 818 66 818 50
HELIX 79 818 85
COLOUR_TEXT_REGION 79 818 85 818 50
HELIX 99 818 102
COLOUR_TEXT_REGION 99 818 102 818 50
STRAND 15 823 21
COLOUR_TEXT_REGION 15 823 21 823 51
STRAND 26 823 34
COLOUR_TEXT_REGION 26 823 34 823 51
STRAND 49 823 53
COLOUR_TEXT_REGION 49 823 53 823 51
STRAND 91 823 93
COLOUR_TEXT_REGION 91 823 93 823 51
STRAND 106 823 109
COLOUR_TEXT_REGION 106 823 109 823 51
STRAND 112 823 114
COLOUR_TEXT_REGION 112 823 114 823 51
STRAND 119 823 123
COLOUR_TEXT_REGION 119 823 123 823 51
STRAND 128 823 131
COLOUR_TEXT_REGION 128 823 131 823 51
HELIX 57 823 65
COLOUR_TEXT_REGION 57 823 65 823 50
HELIX 69 823 71
COLOUR_TEXT_REGION 69 823 71 823 50
HELIX 77 823 85
COLOUR_TEXT_REGION 77 823 85 823 50
HELIX 98 823 103
COLOUR_TEXT_REGION 98 823 103 823 50
STRAND 15 824 21
COLOUR_TEXT_REGION 15 824 21 824 51
STRAND 26 824 34
COLOUR_TEXT_REGION 26 824 34 824 51
STRAND 47 824 52
COLOUR_TEXT_REGION 47 824 52 824 51
STRAND 68 824 71
COLOUR_TEXT_REGION 68 824 71 824 51
STRAND 91 824 94
COLOUR_TEXT_REGION 91 824 94 824 51
STRAND 106 824 109
COLOUR_TEXT_REGION 106 824 109 824 51
STRAND 112 824 115
COLOUR_TEXT_REGION 112 824 115 824 51
STRAND 119 824 123
COLOUR_TEXT_REGION 119 824 123 824 51
STRAND 128 824 130
COLOUR_TEXT_REGION 128 824 130 824 51
HELIX 35 824 42
COLOUR_TEXT_REGION 35 824 42 824 50
HELIX 57 824 67
COLOUR_TEXT_REGION 57 824 67 824 50
HELIX 79 824 85
COLOUR_TEXT_REGION 79 824 85 824 50