SILENT_MODE
BLOCK_FILE jp_SuyfsoD.concise.blc
MAX_NSEQ 816
MAX_INPUT_LEN 818
OUTPUT_FILE jp_SuyfsoD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 805   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 806 97 815 H SPACE
SUB_CHARS 1 806 97 815 E SPACE
SUB_CHARS 1 806 97 815 - SPACE
STRAND 5 809 14
COLOUR_TEXT_REGION 5 809 14 809 51
STRAND 17 809 22
COLOUR_TEXT_REGION 17 809 22 809 51
STRAND 25 809 27
COLOUR_TEXT_REGION 25 809 27 809 51
STRAND 47 809 48
COLOUR_TEXT_REGION 47 809 48 809 51
STRAND 83 809 88
COLOUR_TEXT_REGION 83 809 88 809 51
STRAND 91 809 94
COLOUR_TEXT_REGION 91 809 94 809 51
HELIX 31 809 42
COLOUR_TEXT_REGION 31 809 42 809 50
HELIX 50 809 56
COLOUR_TEXT_REGION 50 809 56 809 50
HELIX 63 809 75
COLOUR_TEXT_REGION 63 809 75 809 50
STRAND 5 814 8
COLOUR_TEXT_REGION 5 814 8 814 51
STRAND 11 814 14
COLOUR_TEXT_REGION 11 814 14 814 51
STRAND 18 814 22
COLOUR_TEXT_REGION 18 814 22 814 51
STRAND 26 814 27
COLOUR_TEXT_REGION 26 814 27 814 51
STRAND 47 814 49
COLOUR_TEXT_REGION 47 814 49 814 51
STRAND 83 814 88
COLOUR_TEXT_REGION 83 814 88 814 51
STRAND 91 814 94
COLOUR_TEXT_REGION 91 814 94 814 51
HELIX 31 814 42
COLOUR_TEXT_REGION 31 814 42 814 50
HELIX 50 814 56
COLOUR_TEXT_REGION 50 814 56 814 50
HELIX 63 814 75
COLOUR_TEXT_REGION 63 814 75 814 50
STRAND 5 815 14
COLOUR_TEXT_REGION 5 815 14 815 51
STRAND 16 815 22
COLOUR_TEXT_REGION 16 815 22 815 51
STRAND 25 815 28
COLOUR_TEXT_REGION 25 815 28 815 51
STRAND 83 815 89
COLOUR_TEXT_REGION 83 815 89 815 51
STRAND 91 815 94
COLOUR_TEXT_REGION 91 815 94 815 51
HELIX 31 815 42
COLOUR_TEXT_REGION 31 815 42 815 50
HELIX 50 815 56
COLOUR_TEXT_REGION 50 815 56 815 50
HELIX 64 815 74
COLOUR_TEXT_REGION 64 815 74 815 50