SILENT_MODE
BLOCK_FILE jp_9lz7HE1.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_9lz7HE1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 152 33   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 34 152 43 H SPACE
SUB_CHARS 1 34 152 43 E SPACE
SUB_CHARS 1 34 152 43 - SPACE
STRAND 3 37 7
COLOUR_TEXT_REGION 3 37 7 37 51
STRAND 33 37 37
COLOUR_TEXT_REGION 33 37 37 37 51
STRAND 46 37 48
COLOUR_TEXT_REGION 46 37 48 37 51
STRAND 74 37 81
COLOUR_TEXT_REGION 74 37 81 37 51
STRAND 101 37 106
COLOUR_TEXT_REGION 101 37 106 37 51
STRAND 127 37 134
COLOUR_TEXT_REGION 127 37 134 37 51
HELIX 16 37 29
COLOUR_TEXT_REGION 16 37 29 37 50
HELIX 40 37 45
COLOUR_TEXT_REGION 40 37 45 37 50
HELIX 60 37 69
COLOUR_TEXT_REGION 60 37 69 37 50
HELIX 86 37 96
COLOUR_TEXT_REGION 86 37 96 37 50
HELIX 110 37 122
COLOUR_TEXT_REGION 110 37 122 37 50
HELIX 139 37 148
COLOUR_TEXT_REGION 139 37 148 37 50
STRAND 3 42 7
COLOUR_TEXT_REGION 3 42 7 42 51
STRAND 33 42 37
COLOUR_TEXT_REGION 33 42 37 42 51
STRAND 48 42 48
COLOUR_TEXT_REGION 48 42 48 42 51
STRAND 59 42 59
COLOUR_TEXT_REGION 59 42 59 42 51
STRAND 74 42 81
COLOUR_TEXT_REGION 74 42 81 42 51
STRAND 101 42 106
COLOUR_TEXT_REGION 101 42 106 42 51
STRAND 128 42 134
COLOUR_TEXT_REGION 128 42 134 42 51
HELIX 15 42 29
COLOUR_TEXT_REGION 15 42 29 42 50
HELIX 40 42 47
COLOUR_TEXT_REGION 40 42 47 42 50
HELIX 60 42 69
COLOUR_TEXT_REGION 60 42 69 42 50
HELIX 85 42 96
COLOUR_TEXT_REGION 85 42 96 42 50
HELIX 110 42 122
COLOUR_TEXT_REGION 110 42 122 42 50
HELIX 139 42 149
COLOUR_TEXT_REGION 139 42 149 42 50
STRAND 3 43 7
COLOUR_TEXT_REGION 3 43 7 43 51
STRAND 33 43 38
COLOUR_TEXT_REGION 33 43 38 43 51
STRAND 43 43 48
COLOUR_TEXT_REGION 43 43 48 43 51
STRAND 75 43 82
COLOUR_TEXT_REGION 75 43 82 43 51
STRAND 101 43 106
COLOUR_TEXT_REGION 101 43 106 43 51
STRAND 127 43 134
COLOUR_TEXT_REGION 127 43 134 43 51
HELIX 17 43 28
COLOUR_TEXT_REGION 17 43 28 43 50
HELIX 61 43 68
COLOUR_TEXT_REGION 61 43 68 43 50
HELIX 86 43 96
COLOUR_TEXT_REGION 86 43 96 43 50
HELIX 110 43 121
COLOUR_TEXT_REGION 110 43 121 43 50
HELIX 139 43 148
COLOUR_TEXT_REGION 139 43 148 43 50