Jpred secondary structure prediction results

QUERY                  : TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIYTDEMVDLESCINELAEGDYEFLAGFVPNDAAAAYLVTFAGILNTETLAIIFDRDADVLEELVNEIMETLDAEIIAARAHHNPAPLRVRIDRFMEEKP : QUERY 
UniRef90_U6EC93        : --KAIILLGCPESPSQTPLTIYAAHKLKNMGYEVTVASTPSAKKLVEVADPVEYYVQKKVDIESCLDNLEEGEFDLLLGFMAKDAAVSYFVTFYHILNTKSLALIFHRDPEKLENFEDSVRESTNAEIASARAYHNPTPLRVRLDRALDK-- : UniRef90_U6EC93
UniRef90_A5UJD1        : --KALILLGCPETPSQTPMSIYASYKLSEKGYDVTIAANPAASKLVKVSDPEKYYIQEMVDLDDCLANVQEGEYDLLLGFVHKDAAASYFVTFYQLLQTKSIALVFEKDSELLKEYTEIVSENTDAEVISVRAFHNPNPIKVNLDKVLKE-- : UniRef90_A5UJD1
UniRef90_F0TCE6        : --KALILLGCPEAPSQTPLAVYTTYKLKEIGYEVTVASTPSAMKLLEVSDPEGFYVTNKVDIESCLENLEEKEYDLLFGFVHKDAAAAYFVTFYHILNTKSVALVFEKDIDLLEKFIKDVQDSTDSEIVSARAYHNPTPLRVKVDRYIK--- : UniRef90_F0TCE6
UniRef90_I7KXX2        : ---ALILLGCPQVPVQTSMALYLAYGLSQRGIRPVVAGTTAARRLMEVADPDRHYLGEMADLDATIDEITGKDFDLCFVFIHNDSGVAYAGTMAYISRARLYALLFGEHAEDLAGEI-----EFPCEVIAAKAVHNPMPLKRRLDEVMQ--- : UniRef90_I7KXX2
UniRef90_Q46E53        : -AKVLLMMGCPEVPIQTSIALYLSHNLTKLGFDVTVAGTTAARKLLKVSDSDGYYVKRLVDLDKTIVDIIEKDFDMCFAFMHNDAGMTYATTMSSISQAMMYSIIFGRNAEALAETI-----EFDCEKIVAQDFHNPVRLKNKLDKVMEE-- : UniRef90_Q46E53
UniRef90_D3E4S8        : --KALVLLGCPEAPSQTPIGLYASYKLGQMGYDVTVSSNPAAGKILDISDPEGVYVKKRVDIEKCLDEIEEGDYDLLVGCVHKDAAATFFITYYHILKCKALALVFSRDAEEVAEFADMVESSTDADIIAVRAFHNPNPIKVRFDKYLK--- : UniRef90_D3E4S8
UniRef90_G7WND6        : --RSLILLGCPEVPVQTSIALYLAYRLRERGDEVVVAGTGAALKLTKLADPLGHYLGETTNIDRCIASISEGDFDQCFAFAHSDAGITYAGTISYISRALLFVLIFGRSAEELAETV-----EFDCRKLVAKAVHDPLPLKRLLDEVI---- : UniRef90_G7WND6
UniRef90_B8GI79        : ---ALILLGCPQVPVQTSLAIYLCHALKAHGVLPTIAGTTSARKLIDVADPEGHYIGTSIDLDACIAAIAEKERDFIFVFVHNDGGVSYAGTMSAISSGRLIAVIYGEHAEEVAATI-----TFPCEKVVAKAVHNPMPLVHKLKEVL---- : UniRef90_B8GI79
UniRef90_R9SK40        : --KALLLLGCPEVPSQTPMAIYAISQLNDMGYEVTVSSNPAAAKLLKVSDPKNCYPHKNVNIDRFLEDAGAKDFDLVLGFVHKDSAATYFITYCSVMNKKAIALVFQRDASLVEDYSKMVSENTDAEVVSCIAYHNPNPIKVNLNKALKN-- : UniRef90_R9SK40
UniRef90_L0HDF3        : ---ALLVLGCPQVPVQTSIALYLINRLKKAGISPVVAGNKAANTLLVVADQDRHYLGEVIDLDRAIGLITDGKFDLCFVFIHNDAGVSYAATMGAISKAKLYGLVYGEHFEEQAKKID-----FPCTVVAAKAVHNPLPLKKAIDEV----- : UniRef90_L0HDF3
UniRef90_F6BA72        : --RVLVLLGCPEPPVLVPSFIYLTNMLKKKGCEVFVSANPAALKLVETADPEKLYIKN-VGFQEIDEGLKEADVDYIISFVHNDAGVSYTITYMHKYKAKTIGIVFGREMK--EDFVNTLKEN-GVEAYFVRAFHNPTPIVVTLKRILEN-- : UniRef90_F6BA72
UniRef90_E3GXM9        : --KVLIMLGCPEYPIQTPLTIYTSYLLKIKNCKVSIAGNPAALNLVKISDPERRYIDKLLNIDS--HEIEKNKWDYLIGFISNDASATYFITFNEILNVGSLSIVFNEDKKELKELVETIKHNTNSKIIQARARHNPKPLVKKIDAFMDE-- : UniRef90_E3GXM9
UniRef90_L0HI59        : ---ALLVPGCPEVPVQQALALHISHNLRKRGTALTVTGNPAVLNLLKVSDPEKLYLPETIVLEKCIEELVEKKRDLCIVFAHSDAGISYAATMRHLLPARLIVIIFGKDPEALAALID-----FPCEKIVDKAVHNPMQLRKKINEVF---- : UniRef90_L0HI59
UniRef90_H1Z466        : --KALLVLGCPQVPTQTAAAMYLAYKLRNAGIRPVIAANPAARMLMKYADPEKHYIDELHDLDKMIGDLVEKEFSLCFVFVHNDSGLSYAASMNIILNGGVIPVIFGKEIESLKEGI-----NFECSVISGRAEHNPKPLINAME------- : UniRef90_H1Z466
UniRef90_UPI0003617A68 : --KIMILLGCPEPPVLIPSFIYLLNMLKNKGHEVYVSANPAALKLIEAADPEKKYLKG-VGFQSIEDGLRDKDVDLIIGFAHNDAAVNYIVTYKMVYGAKALALVFGKEIN--EEFVKLLNEN-GVETYTAKAFHNPTPVIVKLKKMVEN-- : UniRef90_UPI0003617A68
UniRef90_D7DTT0        : ---ILILLGCPEPPLLIPSFMFLLNLLKNKGHQVYVAGNPSALKLIESADPEHHYLKG-VGFQPIDNGLKEKDVDYIFGLTHNDAGVNYIITYKMVYNKDTSALVFGT--GDLESLSKILNEN-GVENKSMRAFHNPTPINVMLKRIFSD-- : UniRef90_D7DTT0
UniRef90_A7IA47        : ---AVLVLGCPQVPVQTSVALYLADKLSVAGIAPVIAGNKAAITLLVVADPKRHYLKEVMDLDRAIAQISDKDFDLCFVFIHNDAGVSYAATMAAISKAKIFPVIYGEHWEEMAAQI-----TFPCTKIAVKAVHNPLPIKKIIDEV----- : UniRef90_A7IA47
UniRef90_B8GH97        : --KGLIILGCPEASAQQALALHVAHNLKKRGAEVLIAGNPAVLNLLKVSDPEKHYITNTMTLEQCIGDVIENDCDLCVVFAHNDAAITYAATMRYLLERKMVVIVFGKDPGPLADAIQ-----FPCEIIVDRAVHNPMKLKTMINRVF---- : UniRef90_B8GH97
UniRef90_A6USJ9        : --KIMIILGCPEPPVLIPSFMNLLSLLKNKGHEIVVSANPAALKLIESADPEKYYLKG-VGFQSIDEGLKEKPVDYIFGFAHNDAAVNYIITYKMVYNIDASAIVFGKDFE--NELVKILSDNVKAEM--AKAFHNPTPLNVKIKKIISE-- : UniRef90_A6USJ9
UniRef90_A0B5R6        : ---ALLLMGCPEVPVQMSLVLYLSGALRDKGLKVFIAGNPAALNLARVADRKRCYLGRLIELERTIADIVEGRRSFCFAFAHNDAGITYAATVRALLEARFFVIIFGRNAEELAGTVD-----FDAEKIAERAVHNPLGLKKKIDEVL---- : UniRef90_A0B5R6
UniRef90_Q2FRW8        : ---AVLVMGCPKVPVQTSLVLYLSNRMKKAGIRTIIAGTPSARQLIRVADPDGHYTMEMKDLDATIAALAKGDLTVTYVFVHNDAGVSYAATMQSLTNQPVMAIIFGEEAEQIAQEI-----TFPCTVIAEPATHNPMSLKNRLEEA----- : UniRef90_Q2FRW8
UniRef90_E1RIN5        : --KVLLVMGCPQVPVQTPAVLYISYKLKEEGYKPVAAGTPAADMIIKYSDPGLYYIGELKNIDSEVARIVDEGYDLCFVFIHNDSGVAYAATMNEILECEVIPVVFGKEYDEMVKLID-----FSSRIISAEAVHNPKPLIKEIDRVMK--- : UniRef90_E1RIN5
UniRef90_A6UVE1        : --RVMILLGCPEPPVLIPSCISLINMLKEKGCEVVISANPAALKLIESADPEKYYLKD-VGAQSIDGGLKNKPVDLIIGMAHNDAAVNYIITYKSVYDAKTVAMVFGKNIN--NELIEDLMEEIPCQ--TAKAFHNPTPVIVKLKKIVEE-- : UniRef90_A6UVE1
UniRef90_J1ARY7        : --EGLIVLGCPEAPVQVSLAIHLAHGLRKAGKTPVITGNPSARALVAMADPEGRYVGEMIDLDRCIEAMAAKERDFAVSFVHVESGVSFAGTISAISGGKVIVVVFGKDAESLSALID-----FPCEKVTVRTAHKAGPLKAAIAEV----- : UniRef90_J1ARY7
UniRef90_C9RE55        : ---ILIVVGCPEPPALIPSVLYLINQLKKKGFNVVVAVNHAALKLLEIADDDKYYLKGVVDIDEGLRGIEG--IDRIITFVHNDGGVSYTATYKVKYNKPTYAIVFGRKINS--DHVEALK-NSNINVYTARAFHNPLPIVNKIKEILAN-- : UniRef90_C9RE55
UniRef90_F4BV71        : --------------MQISIVIYLAHKLKKEGWDVTVAGTNAPIKLLKTADPEGYYVQKTADLDWIIQEIVEKDFDACFAFMHSDAGMAYGATFSAISKAVHYAVVFGKNAEALGESID-----YPTEKIVAKATHNPGPLKSKIDKVI---- : UniRef90_F4BV71
UniRef90_D5VTC6        : ---ILILLGCPEPPAMIPSALYLIAKLRKL-KDIVIAGNHAALKLLDVSDVERHYLKGVIDIDEGLRGLEG--VEKIVSFVHNDGGVSYTVTYKNKYKKECLAILFGRKIN--EEFKKTLEEN-DIKVFPVRAFHNPYPLVKTIDKIISQ-- : UniRef90_D5VTC6
UniRef90_A2SPZ3        : -GEVLILIGCPQIPVQSPLVLYIADFLQDAGHHPVVAANPSAKQLVKTSDPKSHYVSEYKDVEKAIGELADGQYPLIISLIHNDAGLTYTATTSAVAPKSLISVLFGEHAYDLAEEI-----EYPTEKVVAPVTHNTRPLLIKLDEVLE--- : UniRef90_A2SPZ3
UniRef90_Q8TY95        : -------LGCPKIPPKISSAIYACYRYDDRA---LVLSTEAGCKLLEYADPEKEYVDETRTYEKYLEDPDAAG--ILLAFVTNDTELQIAVTLKEVSEPD--------DARAVEEFEDRLE---DCGFLTAPVTHDPKRWVKAVEDVL---- : UniRef90_Q8TY95

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------15 :
OrigSeq                : TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIYTDEMVDLESCINELAEGDYEFLAGFVPNDAAAAYLVTFAGILNTETLAIIFDRDADVLEELVNEIMETLDAEIIAARAHHNPAPLRVRIDRFMEEKP : OrigSeq

Jnet                   : --EEEEE--------HHHHHHHHHHHHHH---EEEEE--HHHHHHEEE-----------HHHHHHHHHH----EEEEEEEE----HHHHHHHHHHH----EEEEEE---HHHHHHHHHHHHH----EEEEEEEE----HHHHHHHHHH---- : Jnet
jhmm                   : --EEEEE-------HHHHHHHHHHHHHHH---EEEEE--HHHHHHHHE----------EHHHHHHHHHH----EEEEEEEE---HHHHHHHHHHHH----EEEEEE---HHHHHHHHHHHHH-----EEEEEEE----HHHHHHHHHHH--- : jhmm
jpssm                  : --EEEEE---------HHHHHHHHHHHH----EEEEEE----EEEEEE------------HHHHHHHH------EEEEEEEE---HHHHHHHHHHH----EEEEEE---HHHHHHHHHHHH-----EEEEEEEE----HHHHHHHHHH---- : jpssm

Lupas 14               : -------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : -------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---BBBBBBBB--B-BBBBBBBBBB-B---BB-BBBBBB-BBB-BB-BBB---BBB--BB-B--BB--B----BBBBBBBBBBBBBBBBBBBBB-BB---BBBBBBB--B--B--BB--B---B-B-BBBB-B-B-B--B---B--BB---- : Jnet_25
Jnet_5                 : ---BBBBBBB-------BBBB-BB--B---B--BBBBB--BB--BB--B------------B--B-----------BBBBB-----BBBBBBB-------BBBBBB-------------B----------B-B------B---B-------- : Jnet_5
Jnet_0                 : ---B-BB------------B---B-------------B---B--BB------------------------------BBB-B-----B--BB-----------B-B----------------------------------------------- : Jnet_0
Jnet Rel               : 98488853778777022899999985520786378862513332023257877425773007888752137880588888626811789999998538964888753766899999999851788518888860686038999998722999 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.