SILENT_MODE
BLOCK_FILE jp_4EWAfOO.concise.blc
MAX_NSEQ 873
MAX_INPUT_LEN 875
OUTPUT_FILE jp_4EWAfOO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 862   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 863 111 872 H SPACE
SUB_CHARS 1 863 111 872 E SPACE
SUB_CHARS 1 863 111 872 - SPACE
STRAND 13 866 17
COLOUR_TEXT_REGION 13 866 17 866 51
STRAND 36 866 41
COLOUR_TEXT_REGION 36 866 41 866 51
STRAND 54 866 58
COLOUR_TEXT_REGION 54 866 58 866 51
STRAND 77 866 80
COLOUR_TEXT_REGION 77 866 80 866 51
HELIX 21 866 32
COLOUR_TEXT_REGION 21 866 32 866 50
HELIX 63 866 72
COLOUR_TEXT_REGION 63 866 72 866 50
HELIX 87 866 95
COLOUR_TEXT_REGION 87 866 95 866 50
HELIX 104 866 109
COLOUR_TEXT_REGION 104 866 109 866 50
STRAND 13 871 17
COLOUR_TEXT_REGION 13 871 17 871 51
STRAND 36 871 41
COLOUR_TEXT_REGION 36 871 41 871 51
STRAND 54 871 58
COLOUR_TEXT_REGION 54 871 58 871 51
STRAND 77 871 80
COLOUR_TEXT_REGION 77 871 80 871 51
HELIX 21 871 32
COLOUR_TEXT_REGION 21 871 32 871 50
HELIX 63 871 72
COLOUR_TEXT_REGION 63 871 72 871 50
HELIX 87 871 96
COLOUR_TEXT_REGION 87 871 96 871 50
HELIX 104 871 108
COLOUR_TEXT_REGION 104 871 108 871 50
STRAND 13 872 17
COLOUR_TEXT_REGION 13 872 17 872 51
STRAND 36 872 41
COLOUR_TEXT_REGION 36 872 41 872 51
STRAND 54 872 59
COLOUR_TEXT_REGION 54 872 59 872 51
STRAND 76 872 80
COLOUR_TEXT_REGION 76 872 80 872 51
STRAND 100 872 100
COLOUR_TEXT_REGION 100 872 100 872 51
HELIX 21 872 31
COLOUR_TEXT_REGION 21 872 31 872 50
HELIX 63 872 72
COLOUR_TEXT_REGION 63 872 72 872 50
HELIX 87 872 95
COLOUR_TEXT_REGION 87 872 95 872 50
HELIX 104 872 109
COLOUR_TEXT_REGION 104 872 109 872 50