SILENT_MODE BLOCK_FILE jp_9mT2utd.concise.blc MAX_NSEQ 959 MAX_INPUT_LEN 961 OUTPUT_FILE jp_9mT2utd.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 133 948 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 949 133 958 H SPACE SUB_CHARS 1 949 133 958 E SPACE SUB_CHARS 1 949 133 958 - SPACE HELIX 9 952 22 COLOUR_TEXT_REGION 9 952 22 952 50 HELIX 25 952 32 COLOUR_TEXT_REGION 25 952 32 952 50 HELIX 39 952 51 COLOUR_TEXT_REGION 39 952 51 952 50 HELIX 55 952 67 COLOUR_TEXT_REGION 55 952 67 952 50 HELIX 74 952 87 COLOUR_TEXT_REGION 74 952 87 952 50 HELIX 90 952 103 COLOUR_TEXT_REGION 90 952 103 952 50 HELIX 111 952 123 COLOUR_TEXT_REGION 111 952 123 952 50 HELIX 127 952 131 COLOUR_TEXT_REGION 127 952 131 952 50 HELIX 9 957 22 COLOUR_TEXT_REGION 9 957 22 957 50 HELIX 25 957 31 COLOUR_TEXT_REGION 25 957 31 957 50 HELIX 39 957 51 COLOUR_TEXT_REGION 39 957 51 957 50 HELIX 55 957 67 COLOUR_TEXT_REGION 55 957 67 957 50 HELIX 75 957 87 COLOUR_TEXT_REGION 75 957 87 957 50 HELIX 91 957 103 COLOUR_TEXT_REGION 91 957 103 957 50 HELIX 111 957 123 COLOUR_TEXT_REGION 111 957 123 957 50 HELIX 127 957 131 COLOUR_TEXT_REGION 127 957 131 957 50 HELIX 9 958 21 COLOUR_TEXT_REGION 9 958 21 958 50 HELIX 25 958 33 COLOUR_TEXT_REGION 25 958 33 958 50 HELIX 39 958 51 COLOUR_TEXT_REGION 39 958 51 958 50 HELIX 55 958 66 COLOUR_TEXT_REGION 55 958 66 958 50 HELIX 73 958 103 COLOUR_TEXT_REGION 73 958 103 958 50 HELIX 111 958 123 COLOUR_TEXT_REGION 111 958 123 958 50 HELIX 127 958 131 COLOUR_TEXT_REGION 127 958 131 958 50