SILENT_MODE
BLOCK_FILE jp_f73ijYX.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_f73ijYX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 154 12   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 13 154 22 H SPACE
SUB_CHARS 1 13 154 22 E SPACE
SUB_CHARS 1 13 154 22 - SPACE
STRAND 117 16 118
COLOUR_TEXT_REGION 117 16 118 16 51
STRAND 127 16 129
COLOUR_TEXT_REGION 127 16 129 16 51
STRAND 143 16 146
COLOUR_TEXT_REGION 143 16 146 16 51
HELIX 2 16 12
COLOUR_TEXT_REGION 2 16 12 16 50
HELIX 16 16 26
COLOUR_TEXT_REGION 16 16 26 16 50
HELIX 33 16 49
COLOUR_TEXT_REGION 33 16 49 16 50
HELIX 55 16 68
COLOUR_TEXT_REGION 55 16 68 16 50
HELIX 72 16 82
COLOUR_TEXT_REGION 72 16 82 16 50
HELIX 85 16 100
COLOUR_TEXT_REGION 85 16 100 16 50
HELIX 106 16 114
COLOUR_TEXT_REGION 106 16 114 16 50
HELIX 130 16 139
COLOUR_TEXT_REGION 130 16 139 16 50
STRAND 116 21 118
COLOUR_TEXT_REGION 116 21 118 21 51
STRAND 127 21 130
COLOUR_TEXT_REGION 127 21 130 21 51
STRAND 142 21 146
COLOUR_TEXT_REGION 142 21 146 21 51
HELIX 2 21 12
COLOUR_TEXT_REGION 2 21 12 21 50
HELIX 16 21 26
COLOUR_TEXT_REGION 16 21 26 21 50
HELIX 33 21 49
COLOUR_TEXT_REGION 33 21 49 21 50
HELIX 60 21 68
COLOUR_TEXT_REGION 60 21 68 21 50
HELIX 72 21 82
COLOUR_TEXT_REGION 72 21 82 21 50
HELIX 85 21 100
COLOUR_TEXT_REGION 85 21 100 21 50
HELIX 106 21 112
COLOUR_TEXT_REGION 106 21 112 21 50
HELIX 131 21 139
COLOUR_TEXT_REGION 131 21 139 21 50
STRAND 117 22 119
COLOUR_TEXT_REGION 117 22 119 22 51
STRAND 127 22 129
COLOUR_TEXT_REGION 127 22 129 22 51
STRAND 143 22 145
COLOUR_TEXT_REGION 143 22 145 22 51
HELIX 2 22 12
COLOUR_TEXT_REGION 2 22 12 22 50
HELIX 15 22 26
COLOUR_TEXT_REGION 15 22 26 22 50
HELIX 33 22 43
COLOUR_TEXT_REGION 33 22 43 22 50
HELIX 46 22 49
COLOUR_TEXT_REGION 46 22 49 22 50
HELIX 53 22 67
COLOUR_TEXT_REGION 53 22 67 22 50
HELIX 73 22 81
COLOUR_TEXT_REGION 73 22 81 22 50
HELIX 85 22 101
COLOUR_TEXT_REGION 85 22 101 22 50
HELIX 105 22 114
COLOUR_TEXT_REGION 105 22 114 22 50
HELIX 130 22 139
COLOUR_TEXT_REGION 130 22 139 22 50
HELIX 148 22 151
COLOUR_TEXT_REGION 148 22 151 22 50