QUERY           : TQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKM : QUERY 
UniRef90_D1L621 : TQQMASSIINSSFEAAVVAATSTLELMGIEYDYNEVFTRVKSKFEFVMDDSGVRNNLMGKAFTIDQALNNRFNSAMRNRNWMCDSKTISKLDEDVNKLRMMLGIDQKMRVLNSCFSVKRIPGKSSSIIRCTRLMRDKLERGEVEVDDSFVEERM : UniRef90_D1L621
UniRef90_E5E7S2 : TQQMVQSVLNSAFDAAVIAATSTLDLMEIKYDHNEVYSRIKNKFEFVMDDSGVRNNLLGKAATVDQALNGKFGSATRNRDWMTDSRTITKLDEDVNRLRMLLGIDQKMRVLNSCFSVKRIPGKSSSIIKCTKLMKDKLERGEVEVED------- : UniRef90_E5E7S2
UniRef90_L0CQJ7 : ----VKSILSAAFDCAVATTKSILEEQQITYDNAEIEAKIRCKMNLILDDSGVQANMLGKAATIDQALSGRMASVSRNANWMTTQYTVAKLDEDVNRLRMMLSIDQKMRVLNSCFKVQRSPNKSSSIITCTKLIKEKLKRGEVEVED------- : UniRef90_L0CQJ7
UniRef90_C3TTS4 : TTLSVKSILVAAFDYAFVTTKSFLDDRKIEYDENDIKIVLKQKMDFILEDSGVKANILGKAATIDQALSGKTASANRNANWMTTQYTVSKLDEDVNRLRMLLSITQETRVLNSCFKVRRDPNKSSSYITCTKLLKEKLKRGEVEVADD-VEEKV : UniRef90_C3TTS4
UniRef90_Q9PY95 : TQASVEWIFNVAGSAASSSLDKAIKDAGGSENFSKVITKFYDNYKDCIDDSGVYNACIGRAKTIDKALNDP-KVAERNEEWYTNVATISRLDLELAELKLMLGIKREERVLNSMFSVVREKGRSSNVIMMKQNAVKMIEEGKLKI--------- : UniRef90_Q9PY95
UniRef90_E2EBU5 : ------------FHGAI-CGRKILRGQGFTPDVKSLHDDIAMKFESMLEESGVKNSVFGRAKTVDEAINGKFFSAQKNRRYMTTIETVKNLESDLYRMRMMLDIKRDARVLSSLFQIEKKTGKSGSVILADASVYDKLEKGEVRVDMGKIESE- : UniRef90_E2EBU5
UniRef90_B7UFA4 : -------------------ATSTLELMGIQYDYNEVFTRVKSKFDYVMDDSGVKNNLLGKAITIDQALNGKFGSAIRNRNWMTDSKTVAKLDEDVNKLRMTFGIDQKMRVLNACFSV------------------------------------- : UniRef90_B7UFA4
UniRef90_M4H254 : -----------------------------------VYARARRRLEYVLDDTGIKGALICRAKTIDHALRGKMESAEKNHEYMTRIETVEKLESDLLQMRTQLGIDRKARVLASLFDVTPWKGKVTSTVVMSDVAKEKFKNGSLRVADD------ : UniRef90_M4H254

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151- :
OrigSeq         : TQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKM : OrigSeq

Jnet            : -HHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHH-----HHHHHHHHH--EE--------EEEHHHHHHHHHH---EEEE-------- : Jnet
jhmm            : -HHHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHHH----------HHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHH-----HHHHHHH---EEE--------EEEEHHHHHHHHH--EEEEE-------- : jhmm
jpssm           : -HHHHHHHHHHH--HHHHHHHHHHHH------HHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHH--EEE-------EEEHHHHHHHHHH---EEE--HHHH--- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ----B-BBBBBBB-BBBBBB--BB----B---B--BB--B---B--BB--BBB-BBBBBBB-BBB-BB---B--B--B--BBB---BB--B---BB-B-B-B-B---B-BB-BBB-B--------BBBBB--BB---B--B-B-B----B---- : Jnet_25
Jnet_5          : ----B--BB--B---BB-BB---B-----------B---B------BB----B---B-B-B--B--B--------------------B--B---B--B-----------BB--B-------------B-B---B-------------------- : Jnet_5
Jnet_0          : -------------------------------------------------------------------------------------------------------------B---B-------------B-B------------------------ : Jnet_0
Jnet Rel        : 7489999987305635778999988527887528999999863344542476400113399998874078610346653212556899999999999987047227999998311013147888743530688888862581354112102289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.