SILENT_MODE BLOCK_FILE jp_WdWSZsv.concise.blc MAX_NSEQ 1102 MAX_INPUT_LEN 1104 OUTPUT_FILE jp_WdWSZsv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 129 1091 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1092 129 1101 H SPACE SUB_CHARS 1 1092 129 1101 E SPACE SUB_CHARS 1 1092 129 1101 - SPACE STRAND 14 1095 17 COLOUR_TEXT_REGION 14 1095 17 1095 51 STRAND 24 1095 28 COLOUR_TEXT_REGION 24 1095 28 1095 51 STRAND 49 1095 54 COLOUR_TEXT_REGION 49 1095 54 1095 51 STRAND 83 1095 87 COLOUR_TEXT_REGION 83 1095 87 1095 51 STRAND 107 1095 110 COLOUR_TEXT_REGION 107 1095 110 1095 51 HELIX 4 1095 10 COLOUR_TEXT_REGION 4 1095 10 1095 50 HELIX 35 1095 42 COLOUR_TEXT_REGION 35 1095 42 1095 50 HELIX 55 1095 62 COLOUR_TEXT_REGION 55 1095 62 1095 50 HELIX 66 1095 77 COLOUR_TEXT_REGION 66 1095 77 1095 50 HELIX 94 1095 102 COLOUR_TEXT_REGION 94 1095 102 1095 50 HELIX 114 1095 127 COLOUR_TEXT_REGION 114 1095 127 1095 50 STRAND 14 1100 17 COLOUR_TEXT_REGION 14 1100 17 1100 51 STRAND 24 1100 29 COLOUR_TEXT_REGION 24 1100 29 1100 51 STRAND 49 1100 54 COLOUR_TEXT_REGION 49 1100 54 1100 51 STRAND 83 1100 87 COLOUR_TEXT_REGION 83 1100 87 1100 51 STRAND 107 1100 110 COLOUR_TEXT_REGION 107 1100 110 1100 51 HELIX 4 1100 11 COLOUR_TEXT_REGION 4 1100 11 1100 50 HELIX 36 1100 43 COLOUR_TEXT_REGION 36 1100 43 1100 50 HELIX 55 1100 62 COLOUR_TEXT_REGION 55 1100 62 1100 50 HELIX 66 1100 77 COLOUR_TEXT_REGION 66 1100 77 1100 50 HELIX 94 1100 102 COLOUR_TEXT_REGION 94 1100 102 1100 50 HELIX 114 1100 127 COLOUR_TEXT_REGION 114 1100 127 1100 50 STRAND 14 1101 16 COLOUR_TEXT_REGION 14 1101 16 1101 51 STRAND 24 1101 28 COLOUR_TEXT_REGION 24 1101 28 1101 51 STRAND 49 1101 54 COLOUR_TEXT_REGION 49 1101 54 1101 51 STRAND 83 1101 87 COLOUR_TEXT_REGION 83 1101 87 1101 51 STRAND 107 1101 109 COLOUR_TEXT_REGION 107 1101 109 1101 51 HELIX 4 1101 10 COLOUR_TEXT_REGION 4 1101 10 1101 50 HELIX 35 1101 41 COLOUR_TEXT_REGION 35 1101 41 1101 50 HELIX 55 1101 61 COLOUR_TEXT_REGION 55 1101 61 1101 50 HELIX 66 1101 77 COLOUR_TEXT_REGION 66 1101 77 1101 50 HELIX 94 1101 102 COLOUR_TEXT_REGION 94 1101 102 1101 50 HELIX 114 1101 127 COLOUR_TEXT_REGION 114 1101 127 1101 50