SILENT_MODE
BLOCK_FILE jp_m7Wh07D.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_m7Wh07D.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 79 5   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 6 79 15 H SPACE
SUB_CHARS 1 6 79 15 E SPACE
SUB_CHARS 1 6 79 15 - SPACE
STRAND 14 9 19
COLOUR_TEXT_REGION 14 9 19 9 51
STRAND 27 9 30
COLOUR_TEXT_REGION 27 9 30 9 51
STRAND 51 9 53
COLOUR_TEXT_REGION 51 9 53 9 51
HELIX 57 9 64
COLOUR_TEXT_REGION 57 9 64 9 50
STRAND 14 14 18
COLOUR_TEXT_REGION 14 14 18 14 51
STRAND 27 14 30
COLOUR_TEXT_REGION 27 14 30 14 51
STRAND 51 14 53
COLOUR_TEXT_REGION 51 14 53 14 51
HELIX 44 14 45
COLOUR_TEXT_REGION 44 14 45 14 50
HELIX 57 14 63
COLOUR_TEXT_REGION 57 14 63 14 50
STRAND 4 15 4
COLOUR_TEXT_REGION 4 15 4 15 51
STRAND 13 15 20
COLOUR_TEXT_REGION 13 15 20 15 51
STRAND 27 15 31
COLOUR_TEXT_REGION 27 15 31 15 51
STRAND 50 15 53
COLOUR_TEXT_REGION 50 15 53 15 51
HELIX 57 15 66
COLOUR_TEXT_REGION 57 15 66 15 50