QUERY           : NNAFCAGFGLSCKWECWCTAHGTGNELRYATAAGCGDHLSKSYYDARAGHCLFSDDLRNQFYSHCSSLNNNMSCRSLSK : QUERY 
UniRef90_P16948 : NNAFCAGFGLSCKWECWCTAHGTGNELRYATAAGCGDHLSKSYYDARAGHCLFSDDLRNQFYSHCSSLNNNMSCRSLSK : UniRef90_P16948

                : 1---------11--------21--------31--------41--------51--------61--------71------- :
OrigSeq         : NNAFCAGFGLSCKWECWCTAHGTGNELRYATAAGCGDHLSKSYYDARAGHCLFSDDLRNQFYSHCSSLNNNMSCRSLSK : OrigSeq

Jnet            : -------------EEEEEE-------EEEE--------------------EEE---HHHHHHHH--------------- : Jnet
jhmm            : -------------EEEEE--------EEEE-------------HH-----EEE---HHHHHHH---------------- : jhmm
jpssm           : ---E--------EEEEEEEE------EEEEE------------------EEEE---HHHHHHHHHH------------- : jpssm

Lupas 14        : ------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --BBBBBBBB-B-B-BBBBB-B----B-BBBB-BBB-BB---BB-B-BBBBBBB--B---BB-BB--B---B-B--B-- : Jnet_25
Jnet_5          : ----B------B-B-BBB--------B-------B---B-----------B-B---B---B---B--------B----- : Jnet_5
Jnet_0          : ---------------B-B--------------------------------B---------------------------- : Jnet_0
Jnet Rel        : 9961036765530688882258887516760257765434345226433245347468999882134677764577889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.