SILENT_MODE BLOCK_FILE jp_fFubHfp.concise.blc MAX_NSEQ 92 MAX_INPUT_LEN 94 OUTPUT_FILE jp_fFubHfp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 105 81 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 82 105 91 H SPACE SUB_CHARS 1 82 105 91 E SPACE SUB_CHARS 1 82 105 91 - SPACE STRAND 40 85 44 COLOUR_TEXT_REGION 40 85 44 85 51 STRAND 50 85 55 COLOUR_TEXT_REGION 50 85 55 85 51 STRAND 80 85 84 COLOUR_TEXT_REGION 80 85 84 85 51 STRAND 95 85 101 COLOUR_TEXT_REGION 95 85 101 85 51 HELIX 18 85 26 COLOUR_TEXT_REGION 18 85 26 85 50 HELIX 63 85 75 COLOUR_TEXT_REGION 63 85 75 85 50 STRAND 40 90 44 COLOUR_TEXT_REGION 40 90 44 90 51 STRAND 50 90 55 COLOUR_TEXT_REGION 50 90 55 90 51 STRAND 80 90 85 COLOUR_TEXT_REGION 80 90 85 90 51 STRAND 95 90 102 COLOUR_TEXT_REGION 95 90 102 90 51 HELIX 19 90 26 COLOUR_TEXT_REGION 19 90 26 90 50 HELIX 63 90 75 COLOUR_TEXT_REGION 63 90 75 90 50 STRAND 39 91 44 COLOUR_TEXT_REGION 39 91 44 91 51 STRAND 49 91 55 COLOUR_TEXT_REGION 49 91 55 91 51 STRAND 80 91 82 COLOUR_TEXT_REGION 80 91 82 91 51 STRAND 96 91 101 COLOUR_TEXT_REGION 96 91 101 91 51 HELIX 18 91 26 COLOUR_TEXT_REGION 18 91 26 91 50 HELIX 63 91 76 COLOUR_TEXT_REGION 63 91 76 91 50