SILENT_MODE
BLOCK_FILE jp_Cdhco3A.concise.blc
MAX_NSEQ 716
MAX_INPUT_LEN 718
OUTPUT_FILE jp_Cdhco3A.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 140 705   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 706 140 715 H SPACE
SUB_CHARS 1 706 140 715 E SPACE
SUB_CHARS 1 706 140 715 - SPACE
STRAND 4 709 17
COLOUR_TEXT_REGION 4 709 17 709 51
STRAND 22 709 31
COLOUR_TEXT_REGION 22 709 31 709 51
STRAND 36 709 42
COLOUR_TEXT_REGION 36 709 42 709 51
HELIX 43 709 56
COLOUR_TEXT_REGION 43 709 56 709 50
HELIX 83 709 101
COLOUR_TEXT_REGION 83 709 101 709 50
HELIX 111 709 117
COLOUR_TEXT_REGION 111 709 117 709 50
STRAND 4 714 10
COLOUR_TEXT_REGION 4 714 10 714 51
STRAND 14 714 17
COLOUR_TEXT_REGION 14 714 17 714 51
STRAND 22 714 31
COLOUR_TEXT_REGION 22 714 31 714 51
STRAND 36 714 42
COLOUR_TEXT_REGION 36 714 42 714 51
HELIX 43 714 56
COLOUR_TEXT_REGION 43 714 56 714 50
HELIX 83 714 101
COLOUR_TEXT_REGION 83 714 101 714 50
HELIX 106 714 107
COLOUR_TEXT_REGION 106 714 107 714 50
HELIX 111 714 116
COLOUR_TEXT_REGION 111 714 116 714 50
STRAND 4 715 17
COLOUR_TEXT_REGION 4 715 17 715 51
STRAND 22 715 31
COLOUR_TEXT_REGION 22 715 31 715 51
STRAND 36 715 42
COLOUR_TEXT_REGION 36 715 42 715 51
STRAND 137 715 138
COLOUR_TEXT_REGION 137 715 138 715 51
HELIX 43 715 56
COLOUR_TEXT_REGION 43 715 56 715 50
HELIX 83 715 102
COLOUR_TEXT_REGION 83 715 102 715 50
HELIX 111 715 117
COLOUR_TEXT_REGION 111 715 117 715 50