Filename Description -------- ----------- jp_nmmV_8R.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_nmmV_8R.als Alscript command file. Used to generate PS/PDF outputjp_nmmV_8R.blast.gz PSIBLAST output (compressed) jp_nmmV_8R.coils.csv The output from coils in CSV format jp_nmmV_8R.coilseq.lupas_14 The output from coils using a window length of 14 jp_nmmV_8R.coilseq.lupas_21 The output from coils using a window length of 21 jp_nmmV_8R.coilseq.lupas_28 The output from coils using a window length of 28 jp_nmmV_8R.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_nmmV_8R.concise.blc A BLC file of the prediction and alignment jp_nmmV_8R.concise.pdf A PDF file of the prediction and alignment jp_nmmV_8R.fasta Input query sequence in FASTA format jp_nmmV_8R.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_nmmV_8R.hmm The HHMer2 profile of the alignment jp_nmmV_8R.html A HTML file of the prediction and alignment jp_nmmV_8R.input Your raw input jp_nmmV_8R.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_nmmV_8R.jnet The output from Jnet jp_nmmV_8R.profile PSIBLAST profile jp_nmmV_8R.pssm PSIBLAST PSSM in a format for Jnet jp_nmmV_8R.seq Your sequence jp_nmmV_8R.simple.html The brief HTML output of the query sequence and prediction only jp_nmmV_8R.svg.html A Jalview generated SVG file with summary of the results.