SILENT_MODE BLOCK_FILE jp_nmmV_8R.concise.blc MAX_NSEQ 288 MAX_INPUT_LEN 290 OUTPUT_FILE jp_nmmV_8R.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 133 277 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 278 133 287 H SPACE SUB_CHARS 1 278 133 287 E SPACE SUB_CHARS 1 278 133 287 - SPACE STRAND 30 281 39 COLOUR_TEXT_REGION 30 281 39 281 51 STRAND 43 281 52 COLOUR_TEXT_REGION 43 281 52 281 51 STRAND 61 281 66 COLOUR_TEXT_REGION 61 281 66 281 51 STRAND 74 281 78 COLOUR_TEXT_REGION 74 281 78 281 51 STRAND 91 281 101 COLOUR_TEXT_REGION 91 281 101 281 51 STRAND 109 281 116 COLOUR_TEXT_REGION 109 281 116 281 51 STRAND 121 281 128 COLOUR_TEXT_REGION 121 281 128 281 51 HELIX 10 281 19 COLOUR_TEXT_REGION 10 281 19 281 50 STRAND 30 286 40 COLOUR_TEXT_REGION 30 286 40 286 51 STRAND 43 286 52 COLOUR_TEXT_REGION 43 286 52 286 51 STRAND 61 286 66 COLOUR_TEXT_REGION 61 286 66 286 51 STRAND 74 286 77 COLOUR_TEXT_REGION 74 286 77 286 51 STRAND 91 286 101 COLOUR_TEXT_REGION 91 286 101 286 51 STRAND 109 286 115 COLOUR_TEXT_REGION 109 286 115 286 51 STRAND 120 286 128 COLOUR_TEXT_REGION 120 286 128 286 51 HELIX 10 286 19 COLOUR_TEXT_REGION 10 286 19 286 50 STRAND 25 287 25 COLOUR_TEXT_REGION 25 287 25 287 51 STRAND 31 287 39 COLOUR_TEXT_REGION 31 287 39 287 51 STRAND 43 287 51 COLOUR_TEXT_REGION 43 287 51 287 51 STRAND 60 287 66 COLOUR_TEXT_REGION 60 287 66 287 51 STRAND 74 287 79 COLOUR_TEXT_REGION 74 287 79 287 51 STRAND 92 287 101 COLOUR_TEXT_REGION 92 287 101 287 51 STRAND 109 287 116 COLOUR_TEXT_REGION 109 287 116 287 51 STRAND 121 287 128 COLOUR_TEXT_REGION 121 287 128 287 51 HELIX 11 287 18 COLOUR_TEXT_REGION 11 287 18 287 50