SILENT_MODE BLOCK_FILE jp_kSHVFdt.concise.blc MAX_NSEQ 229 MAX_INPUT_LEN 231 OUTPUT_FILE jp_kSHVFdt.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 114 218 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 219 114 228 H SPACE SUB_CHARS 1 219 114 228 E SPACE SUB_CHARS 1 219 114 228 - SPACE STRAND 25 222 31 COLOUR_TEXT_REGION 25 222 31 222 51 STRAND 62 222 70 COLOUR_TEXT_REGION 62 222 70 222 51 STRAND 77 222 84 COLOUR_TEXT_REGION 77 222 84 222 51 STRAND 90 222 97 COLOUR_TEXT_REGION 90 222 97 222 51 HELIX 9 222 19 COLOUR_TEXT_REGION 9 222 19 222 50 HELIX 38 222 47 COLOUR_TEXT_REGION 38 222 47 222 50 HELIX 102 222 112 COLOUR_TEXT_REGION 102 222 112 222 50 STRAND 25 227 31 COLOUR_TEXT_REGION 25 227 31 227 51 STRAND 62 227 70 COLOUR_TEXT_REGION 62 227 70 227 51 STRAND 77 227 84 COLOUR_TEXT_REGION 77 227 84 227 51 STRAND 90 227 97 COLOUR_TEXT_REGION 90 227 97 227 51 HELIX 9 227 19 COLOUR_TEXT_REGION 9 227 19 227 50 HELIX 38 227 47 COLOUR_TEXT_REGION 38 227 47 227 50 HELIX 102 227 112 COLOUR_TEXT_REGION 102 227 112 227 50 STRAND 26 228 31 COLOUR_TEXT_REGION 26 228 31 228 51 STRAND 51 228 53 COLOUR_TEXT_REGION 51 228 53 228 51 STRAND 62 228 70 COLOUR_TEXT_REGION 62 228 70 228 51 STRAND 76 228 83 COLOUR_TEXT_REGION 76 228 83 228 51 STRAND 90 228 97 COLOUR_TEXT_REGION 90 228 97 228 51 HELIX 9 228 18 COLOUR_TEXT_REGION 9 228 18 228 50 HELIX 38 228 47 COLOUR_TEXT_REGION 38 228 47 228 50 HELIX 102 228 112 COLOUR_TEXT_REGION 102 228 112 228 50