SILENT_MODE
BLOCK_FILE jp_dNgOMfb.concise.blc
MAX_NSEQ 651
MAX_INPUT_LEN 653
OUTPUT_FILE jp_dNgOMfb.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 123 640   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 641 123 650 H SPACE
SUB_CHARS 1 641 123 650 E SPACE
SUB_CHARS 1 641 123 650 - SPACE
STRAND 4 644 5
COLOUR_TEXT_REGION 4 644 5 644 51
STRAND 10 644 15
COLOUR_TEXT_REGION 10 644 15 644 51
HELIX 20 644 34
COLOUR_TEXT_REGION 20 644 34 644 50
HELIX 39 644 60
COLOUR_TEXT_REGION 39 644 60 644 50
HELIX 66 644 78
COLOUR_TEXT_REGION 66 644 78 644 50
HELIX 83 644 87
COLOUR_TEXT_REGION 83 644 87 644 50
HELIX 91 644 99
COLOUR_TEXT_REGION 91 644 99 644 50
HELIX 114 644 120
COLOUR_TEXT_REGION 114 644 120 644 50
STRAND 4 649 5
COLOUR_TEXT_REGION 4 649 5 649 51
STRAND 9 649 15
COLOUR_TEXT_REGION 9 649 15 649 51
HELIX 20 649 34
COLOUR_TEXT_REGION 20 649 34 649 50
HELIX 38 649 60
COLOUR_TEXT_REGION 38 649 60 649 50
HELIX 66 649 78
COLOUR_TEXT_REGION 66 649 78 649 50
HELIX 83 649 87
COLOUR_TEXT_REGION 83 649 87 649 50
HELIX 91 649 99
COLOUR_TEXT_REGION 91 649 99 649 50
HELIX 115 649 118
COLOUR_TEXT_REGION 115 649 118 649 50
STRAND 4 650 5
COLOUR_TEXT_REGION 4 650 5 650 51
STRAND 11 650 15
COLOUR_TEXT_REGION 11 650 15 650 51
HELIX 21 650 34
COLOUR_TEXT_REGION 21 650 34 650 50
HELIX 43 650 60
COLOUR_TEXT_REGION 43 650 60 650 50
HELIX 67 650 78
COLOUR_TEXT_REGION 67 650 78 650 50
HELIX 83 650 88
COLOUR_TEXT_REGION 83 650 88 650 50
HELIX 91 650 99
COLOUR_TEXT_REGION 91 650 99 650 50
HELIX 114 650 121
COLOUR_TEXT_REGION 114 650 121 650 50