SILENT_MODE
BLOCK_FILE jp_dGRqEmY.concise.blc
MAX_NSEQ 366
MAX_INPUT_LEN 368
OUTPUT_FILE jp_dGRqEmY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 129 355   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 356 129 365 H SPACE
SUB_CHARS 1 356 129 365 E SPACE
SUB_CHARS 1 356 129 365 - SPACE
STRAND 7 359 10
COLOUR_TEXT_REGION 7 359 10 359 51
STRAND 18 359 22
COLOUR_TEXT_REGION 18 359 22 359 51
STRAND 27 359 32
COLOUR_TEXT_REGION 27 359 32 359 51
STRAND 37 359 39
COLOUR_TEXT_REGION 37 359 39 359 51
STRAND 65 359 68
COLOUR_TEXT_REGION 65 359 68 359 51
STRAND 77 359 80
COLOUR_TEXT_REGION 77 359 80 359 51
STRAND 90 359 95
COLOUR_TEXT_REGION 90 359 95 359 51
STRAND 106 359 112
COLOUR_TEXT_REGION 106 359 112 359 51
STRAND 119 359 126
COLOUR_TEXT_REGION 119 359 126 359 51
STRAND 7 364 10
COLOUR_TEXT_REGION 7 364 10 364 51
STRAND 18 364 22
COLOUR_TEXT_REGION 18 364 22 364 51
STRAND 27 364 32
COLOUR_TEXT_REGION 27 364 32 364 51
STRAND 37 364 40
COLOUR_TEXT_REGION 37 364 40 364 51
STRAND 77 364 80
COLOUR_TEXT_REGION 77 364 80 364 51
STRAND 90 364 95
COLOUR_TEXT_REGION 90 364 95 364 51
STRAND 106 364 112
COLOUR_TEXT_REGION 106 364 112 364 51
STRAND 119 364 126
COLOUR_TEXT_REGION 119 364 126 364 51
STRAND 7 365 10
COLOUR_TEXT_REGION 7 365 10 365 51
STRAND 18 365 22
COLOUR_TEXT_REGION 18 365 22 365 51
STRAND 27 365 32
COLOUR_TEXT_REGION 27 365 32 365 51
STRAND 65 365 69
COLOUR_TEXT_REGION 65 365 69 365 51
STRAND 78 365 80
COLOUR_TEXT_REGION 78 365 80 365 51
STRAND 90 365 95
COLOUR_TEXT_REGION 90 365 95 365 51
STRAND 106 365 112
COLOUR_TEXT_REGION 106 365 112 365 51
STRAND 119 365 126
COLOUR_TEXT_REGION 119 365 126 365 51