QUERY           : SCTNTNSQLSANSKCEKSTLTNCYVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN : QUERY 
UniRef90_Q9BJW8 : TCTKTNSWISPNSQCVRSTLTNCNVDNSQVYSTTCTNSRYNGIYITSSTTTGSRITGPGCSISHCTITRGSAAPAPACKISGCTLSAN : UniRef90_Q9BJW8
UniRef90_Q9GT00 : TCRNTNSQIT-NSKCVNSVPTNCYIDNSEVYGTTCTGSRYDGVHITSSTTTGTSASGPGCTISSCTITGGVPAPSAPCRISGCTLRAN : UniRef90_Q9GT00
UniRef90_Q9BJW9 : SCVNTNSQVSENSWCVRSTLTFCNIDNSQLESTTCTRSQYNGAYVVSSRTTNCRISGPACSISRCTITRGVAAPSAACRISGCTLRAN : UniRef90_Q9BJW9
UniRef90_Q9GSA6 : TCVNTNSQITANSQCVKSTATNCYIDNSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSA- : UniRef90_Q9GSA6
UniRef90_Q9GSA5 : TCRNTNSQISANSLCASSTLTNCYIDDSQLESTTCTRSQYNGVYITSSTTTNTRVTGIACSVSSCTITRGVVTPSNACRISGCILRAN : UniRef90_Q9GSA5
UniRef90_Q5I2Y1 : -------QISQYSRCVKSTATNCYIDNSQLGDTTCTGSQYNNANVMTTTTTNCNIRTSQVYTTTCT---------------------- : UniRef90_Q5I2Y1
UniRef90_Q5I2Y2 : -------QISENSRCVNSTANNCYIDNSQVDTTTCTRSRYINANVMISTTTDCSISNSQVLISTCT---------------------- : UniRef90_Q5I2Y2
UniRef90_Q5I2Y9 : -------QISRNSRCNRSTLTNCYVDNSQVDTTTCTSSQYNSANVMTSTTTNCNIRNSYVYTTPCT---------------------- : UniRef90_Q5I2Y9
UniRef90_Q5I2Y9 : TTTCTSSQYNS-ANVMTSTTTNCNIRNSYVYTTPCTSSQYDGIYITSSTTTGSRISGP------------------------------ : UniRef90_Q5I2Y9
UniRef90_Q5I2X3 : -------QISANSQCVRSTLTNCNLDNSQVFDTTCTTSQYNGVRITSSTTTGSRI--------------------------------- : UniRef90_Q5I2X3
UniRef90_Q5I2W9 : -------QVSANSQCVRSTLTNCYVDSSDVSSTTCTGSRYDGVHITSSTTTGTRI--------------------------------- : UniRef90_Q5I2W9
UniRef90_Q5I2Y8 : TTTCTNSQYN-NAYVVISTTTNSIIDYSQVYSTTCTNSHYNGVHITSSTTTNTRITGP------------------------------ : UniRef90_Q5I2Y8
UniRef90_Q5I2Y8 : -----------NSRCFKSTATNCYIDNSQLDTTTCTNSQYNNAYVVISTTTNSIIDYSQVYSTTCT---------------------- : UniRef90_Q5I2Y8
UniRef90_Q5I2Y6 : --------ISTNSQCFSSTVTNSYINNSQLDATTCTNSQYNGAHVMISTTTNCNINNSQLFRTTCT---------------------- : UniRef90_Q5I2Y6
UniRef90_Q5I2Y6 : --TCTNSQYNG-AHVMISTTTNCNINNSQLFRTTCTNSQYTGVYITSSTTTNTHISGP------------------------------ : UniRef90_Q5I2Y6
UniRef90_Q5I2X4 : -----------NSQCVTSTLTNCNLRNSQVDTTTCTNSQYDGIYITTSTTTGSRIS-------------------------------- : UniRef90_Q5I2X4

                : 1---------11--------21--------31--------41--------51--------61--------71--------81------ :
OrigSeq         : SCTNTNSQLSANSKCEKSTLTNCYVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITGGVPAPSAACKISGCTFSAN : OrigSeq

Jnet            : --------------EE--------------------------EEEEE------------EEEEEEEE------------EEEEEEE-- : Jnet
jhmm            : --------------EE--------------------------EEEEE------------EEEEEEEE---------------EEEE-- : jhmm
jpssm           : -------------HEEE------------------------EEEEEE-------E----EEEEEEEEE----------EEEEEEEE-- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --------B---B-BB-BBB-BBBB--B-B--B-BB---B-BBBBBB--B--B-B----B-B--BBB--BB------B-B-BB-B--- : Jnet_25
Jnet_5          : --------------B-------B-B---------B-------B-B---------B----B----B-B----------B-B-------- : Jnet_5
Jnet_0          : ---------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 8678775246664111146777777765456777677764416888537777413257457767887145356777750102888379 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.