SILENT_MODE
BLOCK_FILE jp_fSEojL9.concise.blc
MAX_NSEQ 651
MAX_INPUT_LEN 653
OUTPUT_FILE jp_fSEojL9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 84 640   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 641 84 650 H SPACE
SUB_CHARS 1 641 84 650 E SPACE
SUB_CHARS 1 641 84 650 - SPACE
STRAND 8 644 12
COLOUR_TEXT_REGION 8 644 12 644 51
STRAND 33 644 40
COLOUR_TEXT_REGION 33 644 40 644 51
STRAND 50 644 55
COLOUR_TEXT_REGION 50 644 55 644 51
STRAND 75 644 81
COLOUR_TEXT_REGION 75 644 81 644 51
HELIX 20 644 27
COLOUR_TEXT_REGION 20 644 27 644 50
HELIX 58 644 67
COLOUR_TEXT_REGION 58 644 67 644 50
STRAND 8 649 12
COLOUR_TEXT_REGION 8 649 12 649 51
STRAND 33 649 39
COLOUR_TEXT_REGION 33 649 39 649 51
STRAND 50 649 55
COLOUR_TEXT_REGION 50 649 55 649 51
STRAND 76 649 82
COLOUR_TEXT_REGION 76 649 82 649 51
HELIX 20 649 27
COLOUR_TEXT_REGION 20 649 27 649 50
HELIX 58 649 67
COLOUR_TEXT_REGION 58 649 67 649 50
STRAND 8 650 12
COLOUR_TEXT_REGION 8 650 12 650 51
STRAND 34 650 40
COLOUR_TEXT_REGION 34 650 40 650 51
STRAND 50 650 55
COLOUR_TEXT_REGION 50 650 55 650 51
STRAND 71 650 72
COLOUR_TEXT_REGION 71 650 72 650 51
STRAND 75 650 81
COLOUR_TEXT_REGION 75 650 81 650 51
HELIX 20 650 28
COLOUR_TEXT_REGION 20 650 28 650 50
HELIX 58 650 66
COLOUR_TEXT_REGION 58 650 66 650 50