SILENT_MODE BLOCK_FILE jp_K9Raycb.concise.blc MAX_NSEQ 1270 MAX_INPUT_LEN 1272 OUTPUT_FILE jp_K9Raycb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 168 1259 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1260 168 1269 H SPACE SUB_CHARS 1 1260 168 1269 E SPACE SUB_CHARS 1 1260 168 1269 - SPACE STRAND 35 1263 40 COLOUR_TEXT_REGION 35 1263 40 1263 51 STRAND 46 1263 50 COLOUR_TEXT_REGION 46 1263 50 1263 51 STRAND 82 1263 84 COLOUR_TEXT_REGION 82 1263 84 1263 51 STRAND 113 1263 118 COLOUR_TEXT_REGION 113 1263 118 1263 51 STRAND 124 1263 129 COLOUR_TEXT_REGION 124 1263 129 1263 51 HELIX 3 1263 13 COLOUR_TEXT_REGION 3 1263 13 1263 50 HELIX 17 1263 30 COLOUR_TEXT_REGION 17 1263 30 1263 50 HELIX 54 1263 63 COLOUR_TEXT_REGION 54 1263 63 1263 50 HELIX 66 1263 67 COLOUR_TEXT_REGION 66 1263 67 1263 50 HELIX 70 1263 76 COLOUR_TEXT_REGION 70 1263 76 1263 50 HELIX 95 1263 106 COLOUR_TEXT_REGION 95 1263 106 1263 50 HELIX 138 1263 161 COLOUR_TEXT_REGION 138 1263 161 1263 50 STRAND 35 1268 40 COLOUR_TEXT_REGION 35 1268 40 1268 51 STRAND 46 1268 50 COLOUR_TEXT_REGION 46 1268 50 1268 51 STRAND 82 1268 84 COLOUR_TEXT_REGION 82 1268 84 1268 51 STRAND 113 1268 118 COLOUR_TEXT_REGION 113 1268 118 1268 51 STRAND 124 1268 129 COLOUR_TEXT_REGION 124 1268 129 1268 51 HELIX 3 1268 13 COLOUR_TEXT_REGION 3 1268 13 1268 50 HELIX 17 1268 30 COLOUR_TEXT_REGION 17 1268 30 1268 50 HELIX 54 1268 62 COLOUR_TEXT_REGION 54 1268 62 1268 50 HELIX 66 1268 67 COLOUR_TEXT_REGION 66 1268 67 1268 50 HELIX 70 1268 77 COLOUR_TEXT_REGION 70 1268 77 1268 50 HELIX 96 1268 106 COLOUR_TEXT_REGION 96 1268 106 1268 50 HELIX 138 1268 161 COLOUR_TEXT_REGION 138 1268 161 1268 50 STRAND 35 1269 40 COLOUR_TEXT_REGION 35 1269 40 1269 51 STRAND 46 1269 50 COLOUR_TEXT_REGION 46 1269 50 1269 51 STRAND 81 1269 84 COLOUR_TEXT_REGION 81 1269 84 1269 51 STRAND 112 1269 118 COLOUR_TEXT_REGION 112 1269 118 1269 51 STRAND 124 1269 130 COLOUR_TEXT_REGION 124 1269 130 1269 51 HELIX 3 1269 14 COLOUR_TEXT_REGION 3 1269 14 1269 50 HELIX 17 1269 31 COLOUR_TEXT_REGION 17 1269 31 1269 50 HELIX 54 1269 67 COLOUR_TEXT_REGION 54 1269 67 1269 50 HELIX 71 1269 75 COLOUR_TEXT_REGION 71 1269 75 1269 50 HELIX 95 1269 107 COLOUR_TEXT_REGION 95 1269 107 1269 50 HELIX 138 1269 161 COLOUR_TEXT_REGION 138 1269 161 1269 50