QUERY           : IPAGELQIIDKIDAAFKVAATAAATAPADDKFTVFEAAFNKAIKETTGGAYDTYKCIPSLEAAVKQAYAATVAAAPQVKYAVFEAALTKAITAMSEVQKVSQ : QUERY 
UniRef90_P56165 : IPAGEVEVINKVKAAFSTAATAADEAPANDKFTVFVSSFNKAIKETTGGAYAGYKFIPTLEAAVKQAYAASSATAPEVKYAVFETALKKAISAMSEAQK--- : UniRef90_P56165
UniRef90_F2EBN6 : IPAGEMKVVGQIDTAFRIAATAADAAPVNDRFTVFESAFDKAIKETTGGAYAGYKFVPALESGVKKAYAATVAEVPEVKFLVFEAAITRTI----------- : UniRef90_F2EBN6
UniRef90_F4MJM3 : VPAPQLKVVDQIDAAYRTAATAANAAPTNDKFNVFESSFNKAIKENTGGAYASYTFVPALESAVKQAYAATVASAPEVKYAVFQAALSKAINAMVEAEKDAK : UniRef90_F4MJM3
UniRef90_P56166 : -------------------STAANSAPANDKFTVFEGAFNKAIKERHGGPTETYKFIPSLEAAVKQAYGATVARAPEVKYAVFEAGLTKAITAMSEAQKVAK : UniRef90_P56166
UniRef90_M8BLK5 : IPASELKAIDQIDAAFSTAATAAEAAPKKDMSTVFDSAFSKAIKETTGGAYEGYKFVPAVESAVKKSYATFLPRNPHDKRTLIESFLSDTIVSMAAV----- : UniRef90_M8BLK5
UniRef90_M0VDN4 : IPAGELKAIDQIAAAFRTAATAADAVPKKDKSTIFDSAFSKAIKDTMDGAYQGYKFVPALESGVKEAYSLLLPQRPQNKLMVFEAVLRETI----------- : UniRef90_M0VDN4
UniRef90_O04828 : VPAGELKAIDQVDAAFRTAATAADAAPANDKFTVFESLQQGPSRKPRGGAYESYKFIPALEAAVKQAYAATVAAAPEVKFTVFQTALSKAINAMTQAGKVAK : UniRef90_O04828
UniRef90_Q40962 : IPAGELQVIEKVDAAFKVAATAANAAPANDKFTVFEAAFNDEIKASTGGAYESYKFIPALEAAVKQAYAATVATAPEVKYTVFETALKKAITAMSEAQKAAK : UniRef90_Q40962
UniRef90_M7ZET8 : IPAEELKAIDQIDAAFRTAAAAADAAPIKDKFAVFKSAFNKAIKETTGGAYEGYKFVPDLVSSIKNVYGITVPNTPKDKLLAFESALSKTILAM-------- : UniRef90_M7ZET8
UniRef90_I4IY75 : IPAGELVVIDKIDAAFKAAATQANAAPANDKFTVFETAFNKAIKDSTGGTYETYKFVPGLEAAVKQAYAATVASVPEVKYAVFETALKKAIT---------- : UniRef90_I4IY75
UniRef90_W5FCA3 : IPAGELKAIDQIDTAFRTAATAADAAPAKDKSTVFDSAFSKAIKETMGGAYEAYKFVPALESAVKKTYAFFVPDRPQDKNMVFENALTDTIIALA------- : UniRef90_W5FCA3
UniRef90_W5EEF9 : IPAGELKAIGQIDAAFRTAATAADAAPAKDRSAVFDSAFDKAIKETTGGASGGYKYVPALESAVKEAYAPTNPKNPKIRLMTYETAMVETIFAM-------- : UniRef90_W5EEF9
UniRef90_Q40237 : IPAAEVQLIDKVDAAYRTAATAANAAPANDKFTVFENTFNNAIKVSLGAAYDSYKFIPTLVAAVKQAYAAKQATAPEVKYTVSETALKKAVTAMSEAEK--- : UniRef90_Q40237
UniRef90_P22284 : IPAGELQVIDKVDAAFKVAATAANAAPANDKFTVFEAAFNDAIKASTGGAYQSYKFIPALEAAVKQSYAATVATAPAVKYTVFETALKKAITAMS------- : UniRef90_P22284
UniRef90_P22284 : --------MDKANGAYKTALKAASAVAPAEKFPVFQATFDKNLKEGLSGP-DAVGFAKKLDAFIQTSYLSTKAAEPKEKFDLFVLSLTEVLRFMAGAVKA-- : UniRef90_P22284
UniRef90_Q70JQ0 : -----------------------DAAPVNDKFTVFESAFDKAIKETTGGAYAGYKFVPALESAVKKAYAATVAEAPEVKFTVFEAALTRTIAAMCVAAKGA- : UniRef90_Q70JQ0
UniRef90_M7YYH3 : --AGATQVIKKLDKVIKLASAAAKEAPKADRILVFQAALNKAIKDQMGPGYDGSKTTSDLDAAFKKAVDSAATSKPEAKDTD-------------------- : UniRef90_M7YYH3
UniRef90_M7YYH3 : VPAGEGKAIEKVNQAFKKALDAANAAAPDDKFSVFDAAFNREIKQCLAGM--SAKFIAMIDRAFKIAYNSAVAANAQEKFSCLVLTLTEALRFIAA------ : UniRef90_M7YYH3
UniRef90_M8CAP7 : IPAGELKAIDQIDTAFRTAATAADTAPAKDRSTVFDSAFSKAIKETMGDAYKDYKFVPAIES---------------------------------------- : UniRef90_M8CAP7
UniRef90_M8B8M2 : ---GATQVIKKLDTIIKAASAAAKEAPKADRILVFQAALNKAIKEQMGPGYDGSKTTSDLDAAFKKAH---------------------------------- : UniRef90_M8B8M2
UniRef90_M8B8M2 : --TPEQKFIEKVNQAFKKALDAANAAAPDDKFSVFDAAFNREIKQCLAGM--SAKFISMIDRAFKIAYNSAVAANAQEKFSCLVLTLTEALRFIAA------ : UniRef90_M8B8M2

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------10 :
OrigSeq         : IPAGELQIIDKIDAAFKVAATAAATAPADDKFTVFEAAFNKAIKETTGGAYDTYKCIPSLEAAVKQAYAATVAAAPQVKYAVFEAALTKAITAMSEVQKVSQ : OrigSeq

Jnet            : ----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm            : ----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm           : -----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------EEEEHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25         : -----B-BB--B--BB-BBB-BB--BB----B-BB-BBB---B------BB-BB-BB--B--BB--BB---BB--B-B-B-BBB-BB--BB-BBB-B----- : Jnet_25
Jnet_5          : -----------B--BB--B--------------BB------------------------B---B--B---------------B---B--BB--B-------- : Jnet_5
Jnet_0          : -----------B------B----------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 998523899999999999998741216666402899986302103677778874123447899999986315887527999999999999999999887369 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.