SILENT_MODE
BLOCK_FILE jp_uBikx_4.concise.blc
MAX_NSEQ 335
MAX_INPUT_LEN 337
OUTPUT_FILE jp_uBikx_4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 160 324   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 325 160 334 H SPACE
SUB_CHARS 1 325 160 334 E SPACE
SUB_CHARS 1 325 160 334 - SPACE
STRAND 77 328 77
COLOUR_TEXT_REGION 77 328 77 328 51
HELIX 3 328 14
COLOUR_TEXT_REGION 3 328 14 328 50
HELIX 24 328 35
COLOUR_TEXT_REGION 24 328 35 328 50
HELIX 42 328 51
COLOUR_TEXT_REGION 42 328 51 328 50
HELIX 60 328 73
COLOUR_TEXT_REGION 60 328 73 328 50
HELIX 83 328 93
COLOUR_TEXT_REGION 83 328 93 328 50
HELIX 99 328 104
COLOUR_TEXT_REGION 99 328 104 328 50
HELIX 110 328 120
COLOUR_TEXT_REGION 110 328 120 328 50
HELIX 123 328 137
COLOUR_TEXT_REGION 123 328 137 328 50
HELIX 141 328 151
COLOUR_TEXT_REGION 141 328 151 328 50
HELIX 3 333 14
COLOUR_TEXT_REGION 3 333 14 333 50
HELIX 24 333 35
COLOUR_TEXT_REGION 24 333 35 333 50
HELIX 42 333 51
COLOUR_TEXT_REGION 42 333 51 333 50
HELIX 60 333 73
COLOUR_TEXT_REGION 60 333 73 333 50
HELIX 83 333 93
COLOUR_TEXT_REGION 83 333 93 333 50
HELIX 99 333 103
COLOUR_TEXT_REGION 99 333 103 333 50
HELIX 109 333 120
COLOUR_TEXT_REGION 109 333 120 333 50
HELIX 123 333 126
COLOUR_TEXT_REGION 123 333 126 333 50
HELIX 128 333 137
COLOUR_TEXT_REGION 128 333 137 333 50
HELIX 141 333 151
COLOUR_TEXT_REGION 141 333 151 333 50
HELIX 154 333 154
COLOUR_TEXT_REGION 154 333 154 333 50
STRAND 76 334 78
COLOUR_TEXT_REGION 76 334 78 334 51
STRAND 125 334 125
COLOUR_TEXT_REGION 125 334 125 334 51
HELIX 3 334 14
COLOUR_TEXT_REGION 3 334 14 334 50
HELIX 24 334 35
COLOUR_TEXT_REGION 24 334 35 334 50
HELIX 41 334 51
COLOUR_TEXT_REGION 41 334 51 334 50
HELIX 60 334 73
COLOUR_TEXT_REGION 60 334 73 334 50
HELIX 83 334 92
COLOUR_TEXT_REGION 83 334 92 334 50
HELIX 99 334 104
COLOUR_TEXT_REGION 99 334 104 334 50
HELIX 111 334 124
COLOUR_TEXT_REGION 111 334 124 334 50
HELIX 126 334 137
COLOUR_TEXT_REGION 126 334 137 334 50
HELIX 141 334 151
COLOUR_TEXT_REGION 141 334 151 334 50