SILENT_MODE
BLOCK_FILE jp_xufx3jI.concise.blc
MAX_NSEQ 948
MAX_INPUT_LEN 950
OUTPUT_FILE jp_xufx3jI.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 937   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 938 121 947 H SPACE
SUB_CHARS 1 938 121 947 E SPACE
SUB_CHARS 1 938 121 947 - SPACE
STRAND 15 941 21
COLOUR_TEXT_REGION 15 941 21 941 51
STRAND 25 941 32
COLOUR_TEXT_REGION 25 941 32 941 51
STRAND 37 941 38
COLOUR_TEXT_REGION 37 941 38 941 51
STRAND 42 941 47
COLOUR_TEXT_REGION 42 941 47 941 51
STRAND 62 941 62
COLOUR_TEXT_REGION 62 941 62 941 51
STRAND 71 941 75
COLOUR_TEXT_REGION 71 941 75 941 51
STRAND 77 941 83
COLOUR_TEXT_REGION 77 941 83 941 51
STRAND 91 941 99
COLOUR_TEXT_REGION 91 941 99 941 51
STRAND 111 941 116
COLOUR_TEXT_REGION 111 941 116 941 51
STRAND 15 946 22
COLOUR_TEXT_REGION 15 946 22 946 51
STRAND 25 946 32
COLOUR_TEXT_REGION 25 946 32 946 51
STRAND 37 946 38
COLOUR_TEXT_REGION 37 946 38 946 51
STRAND 42 946 47
COLOUR_TEXT_REGION 42 946 47 946 51
STRAND 62 946 63
COLOUR_TEXT_REGION 62 946 63 946 51
STRAND 71 946 74
COLOUR_TEXT_REGION 71 946 74 946 51
STRAND 77 946 83
COLOUR_TEXT_REGION 77 946 83 946 51
STRAND 91 946 98
COLOUR_TEXT_REGION 91 946 98 946 51
STRAND 111 946 116
COLOUR_TEXT_REGION 111 946 116 946 51
STRAND 14 947 21
COLOUR_TEXT_REGION 14 947 21 947 51
STRAND 25 947 32
COLOUR_TEXT_REGION 25 947 32 947 51
STRAND 37 947 39
COLOUR_TEXT_REGION 37 947 39 947 51
STRAND 42 947 47
COLOUR_TEXT_REGION 42 947 47 947 51
STRAND 71 947 83
COLOUR_TEXT_REGION 71 947 83 947 51
STRAND 92 947 100
COLOUR_TEXT_REGION 92 947 100 947 51
STRAND 110 947 115
COLOUR_TEXT_REGION 110 947 115 947 51